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Cover image for BrainPrint

BrainPrint

Our BrainPrint tools provide shape descriptors of neuroanatomical structures and require a FreeSurfer or FastSurfer segmentation as a pre-processing step. BrainPrint is based on “ShapeDNA” a spectral shape descriptor.

  • Data analysis
  • MRI
  • open source
  • + 1
  • Python
2
113
Cover image for FastSurfer

FastSurfer

FastSurfer is a fast and accurate deep-learning pipeline for the analysis of human brain MRI. FastSurfer provides a fully compatible FreeSurfer alternative for volumetric and surface-based thickness analysis, also supporting sub-mm resolutions, and sub-segmentation of neuroanatomical structures.

  • Data analysis
  • Deep Learning
  • Image processing
  • + 3
  • Jupyter Notebook
  • Python
  • Shell
  • + 1
9
157
Cover image for FatSegNet

FatSegNet

A fully automated deep learning pipeline for adipose tissue (visceral and subcutaneous) segmentation on abdominal Dixon MRI.

  • Data analysis
  • MRI
  • open source
  • Python
  • Dockerfile
  • Shell
2
49
Cover image for FSQC

FSQC

This package provides quality assurance / quality control scripts for FastSurfer- or FreeSurfer-processed structural MRI data.

  • Data analysis
  • MRI
  • Neuroimaging
  • + 2
  • Python
  • Dockerfile
2
0
Cover image for HIPSTA

HIPSTA

The HIPpocampal Shape and Thickness Analysis Toolbox (HIPSTA) present a geometry-based method for the analysis of local hippocampal thickness and curvature and constructs an intrinsic coordinate system (unrolling/flattening) for statistical analysis across multiple participants.

  • MRI
  • Neuroimaging
  • open source
  • + 1
  • Python
1
3
Cover image for InteractiveVis

InteractiveVis

The InteractiveVis software framework provides a blueprint for evaluating 3D datasets with convolutional neural networks (CNNs), and for deriving and visualizing CNN relevance maps. This tool was developed and tested for disease detection in MRI scans. We plan to extend it to other domains.

  • Data Visualization
  • MRI
  • open source
  • + 1
  • Jupyter Notebook
  • HTML
  • MATLAB
  • + 5
1
0
Cover image for JEMRIS

JEMRIS

JEMRIS is a versatile, open-source, multi-purpose MRI simulator. It is well-suited for research and education.

  • MRI
  • Simulation
  • C++
  • Python
  • MATLAB
  • + 4
2
90