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Allpix Squared

Allpix Squared is a semiconductor detector simulation framework. The goal of the framework is to provide a complete and easy-to-use package for end-to-end simulations of semiconductor detector performance from incident ionizing radiation until the digitization of hits in the detector chip.

Drift-Diffusion
Geant4
Monte Carlo
+ 5

C++
CMake
C
+ 2

Arbor

Arbor is a high-performance library for computational neuroscience simulations with multi-compartment, morphologically-detailed cells, from single cell models to very large networks. Arbor is written from the ground up to help neuroscientists effectively use contemporary and future HPC systems.

GPU
High performance computing
Neural network
+ 4

C++
AGS Script
Python
+ 8

CADET

CADET is a fast and accurate solver for a comprehensive model family of biotechnological processes. Applications include chromatography, filtration, crystallization, and fermentation. The open source software implements state-of-the-art mathematical algorithms and scientific computing techniques.

adsorption
chromatography
compartment modelling
+ 4

C++
MATLAB
CMake
+ 1

126

cnpy++

cnpy++ is a C++17 library that allows to read and write NumPy data files (.npy and .npz). It is designed in a way to integrate well into the modern C++ ecosystem and it provides features not available in any similar C++/npy library.

data managment

C++
CMake
C

CrystFEL

CrystFEL is a suite of programs to process data from "serial crystallography" experiments.

crystallography
Matter
structural biology
+ 2

C
Python
Shell
+ 2

293

easyWave

easyWave-GPU computes tsunami wave propagations in a fraction of minute on GPU-powered machines. Thus , a single simulation, or several simulations with varying granularity, covering several hours of tsunami wave propagation, and tailored to the actual situation can be computed within seconds.

early warning
Earth & Environment
tsunami forecasting

C++
Cuda
Python
+ 2

ELECTRODE

ELECTRODE extends the atomistic simulation tool LAMMPS to model different types of electrochemical situations. Simulations are performed at constant potential or constant charge using different approaches to control potential or charge at the electrodes.

Constant Potential Method
Electrochemistry
Molecular Dynamics

C++
Tcl
Fortran
+ 23

Elephant

Elephant (Electrophysiology Analysis Toolkit) is an open-source, community centered library for the analysis of electrophysiological data in the Python programming language.

data-analysis
electrophysiology
neurophysiology
+ 2

Python
C++
Cuda
+ 1

FairMQ

FairMQ is designed to help implement large-scale data processing workflows needed in next-generation particle physics experiments.

framework
Matter
workflow library

C++
CMake
C
+ 2

FESOM

FESOM (Finite-Element/volumE Sea ice-Ocean Model) is a multi-resolution sea ice-ocean model that solves the equations of motion on unstructured meshes.

climate modelling
Earth & Environment
exascale
+ 5

Jupyter Notebook
Fortran
C
+ 9

FLEUR

FLEUR is a feature-full, freely available FLAPW (full-potential linearized augmented-plane-wave) code, based on density-functional theory. This highly precise all-electron approach is universally applicable to all atoms of the periodic table and to systems with compact as well as open structures.

DFT
High performance computing
hpc
+ 3

Fortran Free Form
C
Motorola 68K Assembly
+ 2

GMGPolar

GMGPolar is a geometric multigrid solver using implicit extrapolation to raise the convergence order. It is based on meshes in tensor- or product-format. GMGPolar's focus applications are geometries that can be described by polar or curvilinear coordinates for which suited smoothing is available.

Energy
Geometric Multigrid
High performance computing
+ 5

C++
Python
CMake
+ 2