All software

Prospective Monitoring and Management - App (PIA)

PIA is a free open-source eResearch System for monitoring of incident events and provides a digital infrastructure for conducting population-based studies in any research field - at a study centre or at home. PIA focuses on repeated surveys. #DigitalEpidemiology #LongitudinalDataCollection #FOSS

HIPSTA

The HIPpocampal Shape and Thickness Analysis Toolbox (HIPSTA) present a geometry-based method for the analysis of local hippocampal thickness and curvature and constructs an intrinsic coordinate system (unrolling/flattening) for statistical analysis across multiple participants.

SicHash

A perfect hash function is a function that has no collisions on a given set. SicHash places objects in a cuckoo hash table and then stores the final hash function choice of each object in a retrieval data structure. Using irregular cuckoo hashing, each object has a different number of hash functions

TBT-Segmentation

Our tool uses Temporal Behavior Trees (TBT), a novel formalism for monitoring specifications, to segment traces provided as CSVs. Developers input a trace, and the tool analyzes it using a TBT to identify which parts of the software worked and which didn’t, aiding in system analysis and debugging.

CICMoD - A Climate Index Collection based on Model Data

The software provides a consistent and comprehensive collection of climate indices typically used to describe Earth System dynamics and serves as a new benchmark data set. It allows users to develop new machine learning methods and to compare their results to existing methods in an objective way.

dCache

dCache is a system for storing and retrieving huge amounts of scientific data, distributed among a large number of heterogeneous server nodes, under a single virtual filesystem tree with a variety of standard access methods including NFSv4.1 (pNFS), FTP, WebDav and xroot.

PeriHub

PeriHub is a platform that provides a numerical implementation of the peridynamic theory. It is an extension of the open source Peridigm software. Peridynamics is a non-local theory that overcomes discontinuity problems of the classical theory of continuum mechanics.

Trimmomatic

Trimmomatic is a command line tool that performs a variety of functions for Illumina paired-end and single-end sequencing data, including sequence trimming and adapter removal. It is a flexible and efficient NGS preprocessing tool, which greatly improves downstream applications.

wps-command-line-tool-repository

A wrapper framework around the WPS 4.0 server by 52° North to allow easy integration of command line scripts into WPS services.

base-repo

Base-repo is a generic, domain-agnostic research data repository suitable to store and manage all kinds of research data. Its content is organized as DataResources, which consist of descriptive DataCite-compliant Metadata and one or more data elements, either stored as files or linked by reference.

Computer Vision Experimentation Frameworks - Generalized-YOLOv5

Constellation

Control and data acquisition system for small-scale experiments and experimental setup with volatile and dynamic constituents such as test beam environments or laboratory test stands