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109-120 of 140

nnU-Net

Automatic configuration and training of U-Net-based segmentation pipelines. Works out-of-the-box for a broad range of datasets from all imaging domain! Supports 2D and 3D (multi-channel) images.

2D images
3D images
semantic segmentation
+ 1

Python
Shell

oidc-agent

oidc-agent is an OpenID Connect tool suite designed to simplify authentication processes for command-line applications and workflows that require access to resources protected by OIDC. It provides a secure, but user-friendly way to manage tokens on the command-line.

AAI
command-line
OIDC
+ 2

C
C++
Makefile
+ 4

openFuelCell2

openFuelCell2 is a computational fluid dynamics (CFD) toolbox for simulating electrochemical devices such as fuel cells and electrolysis. The solver is based on the open-source library, OpenFOAM®.

Electrolyzer
Energy
Fuel cells
+ 1

C
C++
Python
+ 2

openPMD-api

openPMD is an open meta-data schema that provides meaning and self-description for datasets in science and engineering. This library provides a reference API for openPMD data handling, supporting established I/O backends such as HDF5, ADIOS2, JSON and TOML from serial to MPI-parallel workflows.

ADIOS
data
file-format
+ 8

C++
Python
CMake
+ 4

ParFlow

ParFlow is a parallel, integrated hydrology model that simulates spatially distributed surface and subsurface flow.

Earth System Modelling
High performance computing
Hydrology
+ 2

C
Tcl
Python
+ 16

PiGx

PiGx is a collection of genomics pipelines. All pipelines are easily configured with a simple sample sheet and a descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.

HTML
Python
R
+ 7

Potsdam Open-source Radio interferometry Tool (PORT)

PORT is a software package dedicated to the analysis of modern and historical Very Long Baseline Interferometry (VLBI) observations. It is utilized to perform the GFZ VLBI Analysis Center responsibilities, as well as state-of-the-art research in space geodesy, geophysics, and astrometry.

Astrometry
Earth orientation parameters
Reference frames
+ 1

Python
MATLAB
Fortran
+ 2

ProFASi

PROFASI (PROtein Folding and Aggregation SImulator) is a C++ package for HPC Monte Carlo simulations of protein folding and aggregation. It provides an all atom, implicit solvent force field, and a set of tools to perform Monte Carlo simulations. A plugin mechanism allows for user extensions.

Monte Carlo
Peptide Aggregation
Protein folding
+ 2

C++
CMake
Python
+ 1

RAFCON

RAFCON uses hierarchical state machines, featuring concurrent state execution, to represent robot programs. It ships with a graphical user interface supporting the creation of state machines and contains IDE like debugging mechanisms.

Aeronautics, Space and Transport
collaboration
robotics
+ 2

Python
SCSS
Shell
+ 1

RAYX

Optical Simulation Software for Synchrotron Radiation

C++
open source
python
+ 2

C++
Python
CSS
+ 7

RCE

RCE is a distributed integration environment for scientists and engineers to analyze, optimize, and design complex systems like aircraft, ships, or satellites.

Aeronautics, Space and Transport
collaboration
Distributed Execution
+ 3

Java
HTML
Gherkin
+ 8

ReStore

ReStore for MPI programs enables scalable in-memory recovery of data after process failures via an appropriate data distribution and replication. It supports shrinking and replacing recovery-schemes and is substantially faster than parallel file system based approaches.

Distributed Memory Algorithms
Fault-Tolerance
High performance computing

C++
R
CMake
+ 2