University of Tübingen
CellRank
CellRank is a computational framework to study cellular fate decisions based on various types of single-cell genomics data. CellRank scales to large cell numbers, is fully compatible with the scverse ecosystem, and is easy to use.
- Data analysis
- fate mapping
- fate prediction
- + 7
- Python
DataLad
DataLad is a tool for the joint management of code, data, and their relationship, built on top of the version control systems Git & git-annex. It adapts principles of open-source software development & distribution to address challenges of data management, data sharing, & digital provenance capture.
- DataLad
- data managment
- data sharing
- + 8
- Python
- Shell
- Makefile
- + 4
DataLad NEXT extension
This DataLad extension is a staging area for add-ons, for performance upgrades, and user experience improvements. Unlike other topical extensions, the focus is on functionality with broad applicability.
- data distribution
- DataLad
- data management
- Python
- Shell
- Batchfile
- + 2
Reflectorch
Reflectorch is a Python package for the analysis of X-ray and neutron reflectivity data using Pytorch-based neural networks. It provides fast simulation of reflectometry curves by GPU, parameterization via YAML configuration files, and prior-aware training.
- Machine learning
- neutron
- open source
- + 3
- Python
- TeX
- Dockerfile