BaSiC is a specialized MATLAB tool designed for the background and shading correction of optical microscopy images. BaSiC addresses critical challenges in image processing, thereby enhancing the quality and reliability of microscopy data.
BaSiC is a tool designed to correct the background and shading of optical microscopy images. It is available both as MATLAB code and as an ImageJ/Fiji plugin.
The project is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International Public License. It is available for academic use for free, but for commercial use, you would need to contact the developers.
For detailed installation instructions, especially regarding the ImageJ/Fiji plugin, refer to the README section on the GitHub page.
The tool was introduced in a publication in Nature Communication. You can find more about the publication through this DOI: 10.1038/ncomms14836.
Fabian J. Theis
Optical Microscopy Images
Background and Shading Correction
Shading Correction Algorithm
If you have any issues, suggestions, or contributions, you can open an issue in the GitHub Issues section.
Should you have any specific inquiries regarding BaSiC, please do not hesitate to reach out to Tingying Peng at [email@example.com]