All software
hextraj: hex labelling of trajectory data
hextraj maps longitude/latitude positions onto a projected hexagonal grid and provides tools for aggregating trajectory data over hex cells and for computing origin-destination connectivity between them.
- connectivity
- dask
- geospatial
- + 7
Lightning UQ Box
The lightning-uq-box is a PyTorch library that provides various Uncertainty Quantification (UQ) techniques for modern neural network architectures.
- Deep Learning
- python
- uncertainty quantification
- Python
Mancoga Coastal Vulnerability App
A MANCOGA* app to visualize relative vulnerability across the coastal districts of Ghana *Mangroves as Nature-Based Solutions to Coastal Hazards in Eastern Ghana
- Climate change adaptation
- Coastal management
- Decision making support
- + 1
- Python
- CSS
MemRBC
MemRBC is an R package for spectral modeling of red blood cell shapes in R. It is the result of open science research, demonstrating the idea of hi-level apps with metadata creation in a lightweight obejct oriented approach.
- cell shape
- Helfrich
- R
- + 5
- R
- JavaScript
- C++
- + 1
O2A SEQUENCES
O2A SEQUENCES provides a single platform for the full metabarcoding lifecycle: it keeps samples, metadata, and sequences linked, runs containerized workflows that produce provenance-tracked ASV tables, generates submission-ready exports for public archives, and delivers AI-ready outputs.
- bioinformatics
- Data analysis
- data managment
- + 7
OSADCP Toolbox
Open-source Python toolbox called OSADCP for scientists to convert, clean, calibrate and organize binary raw vessel-mounted Acoustic Doppler Current Profiler (ADCP) data for scientific use. The toolbox is designed to process ADCP measurements in deep water by Teledyne RDI Ocean Surveyor ADCPs.
- Data Visualization
- Earth & Environment
- FAIR Data
- + 5
- Python
otter
The otter Framework combines community network analysis using Co-Occurrence networks, Louvain Clustering and Convergent Cross Mapping networks. Funding through the Helmholtz DataHub Initiative; project iLOVE.
- Community Dynamics
- Earth & Environment
- python
- Python
OxyPOM
OxyPOM: a biogeochemical model for Oxygen and Particulate Organic Matter dynamics with detailed temperature sensitivity
- Biogeochemistry
- Hypoxia
- Phytoplankton viral infection
- + 2
- Fortran Free Form
- R
- Shell
- + 2
ParFlow
ParFlow is a parallel, integrated hydrology model that simulates spatially distributed surface and subsurface flow.
- Earth System Modelling
- High performance computing
- Hydrology
- + 2
- C
- Tcl
- Python
- + 17
PyCast S2S
PyCast S2S is a collection of tools for post-processing climate forecasts. It is tailored towards the integration in operational workflows, allowing for automated bias-correction and forecast evaluation. PyCast is written in Python and uses state-of-the-art libraries for data processing.
- Climate forecasting
- Earth & Environment
- open source
- + 1
- Jupyter Notebook
- Python
pycmor
A Python package that simplifies the conversion of climate model output into CMOR-compliant formats, supporting CMIP6 and CMIP7 standards. Provides a modular, plugin-based pipeline for processing NetCDF data from diverse Earth system models.
- CF-conventions
- climate model output
- CMIP6
- + 7
- Python
py-cordex
py-cordex is a Python library for managing CORDEX grids, handling rotated/projection-based domains, and supporting CMORization of regional climate data. It enables compliant metadata, grid generation, and integration with xarray for climate workflows.
- CORDEX
- Earth & Environment
- python
- Python
- Makefile