All software
CICMoD - A Climate Index Collection based on Model Data
The software provides a consistent and comprehensive collection of climate indices typically used to describe Earth System dynamics and serves as a new benchmark data set. It allows users to develop new machine learning methods and to compare their results to existing methods in an objective way.
- Earth & Environment
- FAIR Data
- Image processing
- + 1
- Jupyter Notebook
- Python
- Shell
- + 1
dCache
dCache is a system for storing and retrieving huge amounts of scientific data, distributed among a large number of heterogeneous server nodes, under a single virtual filesystem tree with a variety of standard access methods including NFSv4.1 (pNFS), FTP, WebDav and xroot.
- data managment
- FAIR Data
- Java
- HTML
- JavaScript
- + 12
MoReCluster
A Python-based framework for grouping and clustering of chemicals based on shared molecular response patterns extracted from CTD. It builds on the CGPD-tetramers to identify coherent substance groups that exhibit common molecular and phenotypic effects.
- Earth & Environment
- FAIR Data
- FAIR Software
- + 2
- Python
- Shell
- Dockerfile
pid-component
The pid-component is an easy to use web component that can be used to display PIDs, DOIs, ORCiDs, RORs, and other identifiers in an intuitive way. It is designed to be embeddable in any website and has a small form-factor mode that reduces its height to that of a single line of text.
- Angular
- Data Visualization
- FAIR
- + 19
- TypeScript
- MDX
- Vue
- + 4
Alpaca
Alpaca (Automated Lightweight Provenance Capture) captures the provenance during the execution of Python scripts that process data and stores the information using a data model based on the the W3C PROV standard.
- FAIR Data
- Information
- metadata
- + 3
- Python
anndata
anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and a PyTorch interface.
- bioinformatics
- data managment
- FAIR Data
- + 1
- Python
base-repo
Base-repo is a generic, domain-agnostic research data repository suitable to store and manage all kinds of research data. Its content is organized as DataResources, which consist of descriptive DataCite-compliant Metadata and one or more data elements, either stored as files or linked by reference.
- Datacite
- data managment
- FAIR Data
- + 1
- Java
- Shell
- Dockerfile
case-e
case-e is an open-source electronic case report form (eCRF) system for designing clinical studies and collecting structured research data. It supports configurable forms, validation, role-based access, audit trails, versioning, and portable exports for transparent, FAIR-oriented research workflows.
- BIDS
- Biomedical Ontologies
- Clinical Research
- + 9
- Vue
- Python
- JavaScript
- + 4
Cat4KIT
Cat4KIT is an open-source framework for cataloging, managing and publishing research data according to the FAIR principles. Building on the STAC-Ecosystem, it allows for a simple and user-friendly description, integration and discovery of research data.
- data managment
- Earth & Environment
- FAIR Data
- + 2
DAMNIT
DAMNIT (Data And Metadata iNspection Interactive Thing) is a tool developed by the Data Analysis group at the European XFEL to provide users with a way to automatically create an overview of their experiment, hopefully replacing the manually-created spreadsheets that are often used.
- Data analysis
- FAIR Data
- metadata
- + 1
- Python
DataDesc
The framework surrounding DataDesc, a metadata schema for software documentation with focus on interfaces, comes with a machine-actionable metadata exchange format and a software toolkit supporting the documentation, extraction and publication of software metadata.
- data managment
- ESD
- FAIR Data
- + 4
- Python
- Shell
- Jupyter Notebook
Dynamic JSON Form Renderer
A reusable React and TypeScript library for generating accessible, terminology-aware forms with metadata support.
- controlled vocabularies
- dynamic forms
- FAIR Data
- + 14
- TSX
- TypeScript