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37-48 of 81

scanpy

Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.

bioinformatics
Data analysis
python

Python
R

VASCA

The VAriable Source Cluster Analysis (VASCA) is an astronomy pipeline for time-variable sources.

Astronomy
catalogue
Data analysis
+ 6

Jupyter Notebook
Python

Alise

The Account LInking SErvice (ALISE) is a tool to link accounts at a service. The goal is to enable federated services at sites that do not yet support federated identities.

AAI
Helmholtz AAI
hpc
+ 3

Python
HTML
Makefile

Alpaca

Alpaca (Automated Lightweight Provenance Capture) captures the provenance during the execution of Python scripts that process data and stores the information using a data model based on the the W3C PROV standard.

FAIR Data
Information
metadata
+ 3

Python

anndata

anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and a PyTorch interface.

bioinformatics
data managment
FAIR Data
+ 1

Python

beos

Calculation of the buckling behavior of composite shells

Fortran
python

Python

boxbeam

Computation of effective cross-sectional properties of composite beams

Fortran
python

Python

CIMPredict

CIMPredict delivers an alternative to the FRAX fracture risk calculator for osteoporosis patients based on a new Calcium isotope marker in blood.

Blue Health Tech
Data analysis
Health
+ 2

Python
R

Collector App

The Collector App is the backend of the biotic database system called CRITTERBASE. It is used for the import and administration of the underlying data.

Biota
data
data warehouse
+ 7

DataDesc

The framework surrounding DataDesc, a metadata schema for software documentation with focus on interfaces, comes with a machine-actionable metadata exchange format and a software toolkit supporting the documentation, extraction and publication of software metadata.

data managment
ESD
FAIR Data
+ 4

Python
Shell
Jupyter Notebook

DeepLOKI

DeepLOKI is an AI-based software that uses deep learning to classify zooplankton species from high-resolution images, improving research efficiency by enabling faster and more accurate onboard image analysis in marine science.

Data analysis
Earth & Environment
Machine learning
+ 2

Python

DeepTrees🌳

Tree Crown Segmentation and Analysis in Remote Sensing Imagery with PyTorch

Deep Learning
Earth & Environment
open source
+ 3

Jupyter Notebook
Python
Shell