All software
scanpy
Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.
- bioinformatics
- Data analysis
- python
- Python
- R
VASCA
The VAriable Source Cluster Analysis (VASCA) is an astronomy pipeline for time-variable sources.
- Astronomy
- catalogue
- Data analysis
- + 6
- Jupyter Notebook
- Python
Alise
The Account LInking SErvice (ALISE) is a tool to link accounts at a service. The goal is to enable federated services at sites that do not yet support federated identities.
- AAI
- Helmholtz AAI
- hpc
- + 3
- Python
- HTML
- Makefile
Alpaca
Alpaca (Automated Lightweight Provenance Capture) captures the provenance during the execution of Python scripts that process data and stores the information using a data model based on the the W3C PROV standard.
- FAIR Data
- Information
- metadata
- + 3
- Python
anndata
anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and a PyTorch interface.
- bioinformatics
- data managment
- FAIR Data
- + 1
- Python
beos
Calculation of the buckling behavior of composite shells
- Fortran
- python
- Python
boxbeam
Computation of effective cross-sectional properties of composite beams
- Fortran
- python
- Python
Calopy
A web-based, open-source platform for the analysis of indirect calorimetry data, measuring energy metabolism in animals and humans.
- Data analysis
- Data Visualization
- Health
- + 2
- Python
- Dockerfile
- CSS
CIMPredict
CIMPredict delivers an alternative to the FRAX fracture risk calculator for osteoporosis patients based on a new Calcium isotope marker in blood.
- Blue Health Tech
- Data analysis
- Health
- + 2
- Python
- R
Collector App
The Collector App is the backend of the biotic database system called CRITTERBASE. It is used for the import and administration of the underlying data.
- Biota
- data
- data warehouse
- + 7
DataDesc
The framework surrounding DataDesc, a metadata schema for software documentation with focus on interfaces, comes with a machine-actionable metadata exchange format and a software toolkit supporting the documentation, extraction and publication of software metadata.
- data managment
- ESD
- FAIR Data
- + 4
- Python
- Shell
- Jupyter Notebook
DataFlow
A comprehensive framework for automated data processing and manual postprocessing, including quality control and flagging. Modular and extensible design allows to create customizable pipelines and monitor their performance throughout the data lifecycle.
- data managment
- Data Visualization
- Pipeline
- + 2
- TSX
- Python
- TypeScript
- + 2