All software
motley-cue
enable SSH with federated identities
- AAI
- Helmholtz AAI
- OIDC
- + 1
- Python
- Makefile
- Shell
MTRESS
MTRESS (Model Template for Renewable Energy Supply Systems) facilitates the creation of energy system optimisation models for individual residential and commercial buildings as well as for neighbourhoods and entire industrial properties.
- Energy
- ESD
- ESD - Topic 2
- Python
NESTML
NESTML is a domain-specific language for neuron and synapse models. It combines an easy to understand, yet powerful syntax with good simulation performance by means of code generation.
- Modelling
- Simulation
- spiking neural networks
- Python
- Jinja
- ANTLR
- + 4
nnU-Net
Automatic configuration and training of U-Net-based segmentation pipelines. Works out-of-the-box for a broad range of datasets from all imaging domain! Supports 2D and 3D (multi-channel) images.
- 2D images
- 3D images
- semantic segmentation
- + 1
- Python
- Shell
novoSpaRc
novoSpaRc predicts locations of single cells in space by solely using single-cell RNA sequencing data. An existing reference database of marker genes is not required, but significantly enhances performance if available.
- Data analysis
- open source
- single-cell RNA-seq
- Jupyter Notebook
- HTML
- Python
Nexus - Nuclear Elastic X-ray scattering Universal Software
The Nuclear Elastic X-ray scattering Universal Software (Nexus) is a Python package for simulating and fitting of Mossbauer spectra, nuclear resonant scattering (NRS) data, pure electronic X-ray reflectivities (XRR), nuclear X-ray reflectivities, and polarization dependent electronic scattering.
- Mossbauer
- Mossbauer spectroscopy
- Nuclear resonant scattering
- + 1
- C++
- SWIG
- Python
- + 2
ODM2SMS
A tool to migrate sensor metadata from the observation data model to the Helmholtz Sensor Management System via API.
- Earth & Environment
- metadata
- Research Data Management
- + 1
- Python
- Dockerfile
openFuelCell2
openFuelCell2 is a computational fluid dynamics (CFD) toolbox for simulating electrochemical devices such as fuel cells and electrolysis. The solver is based on the open-source library, OpenFOAM®.
- Electrolyzer
- Energy
- Fuel cells
- + 1
- C
- C++
- Python
- + 2
openPMD-api
openPMD is an open meta-data schema that provides meaning and self-description for datasets in science and engineering. This library provides a reference API for openPMD data handling, supporting established I/O backends such as HDF5, ADIOS2, JSON and TOML from serial to MPI-parallel workflows.
- ADIOS
- data
- file-format
- + 8
- C++
- Python
- CMake
- + 5
OSADCP Toolbox
Open-source Python toolbox called OSADCP for scientists to convert, clean, calibrate and organize binary raw vessel-mounted Acoustic Doppler Current Profiler (ADCP) data for scientific use. The toolbox is designed to process ADCP measurements in deep water by Teledyne RDI Ocean Surveyor ADCPs.
- Data Visualization
- Earth & Environment
- FAIR Data
- + 5
- Python
otter
The otter Framework combines community network analysis using Co-Occurrence networks, Louvain Clustering and Convergent Cross Mapping networks. Funding through the Helmholtz DataHub Initiative; project iLOVE.
- Community Dynamics
- Earth & Environment
- python
- Python
ParFlow
ParFlow is a parallel, integrated hydrology model that simulates spatially distributed surface and subsurface flow.
- Earth System Modelling
- High performance computing
- Hydrology
- + 2
- C
- Tcl
- Python
- + 16