All software
PyPlaque
PyPlaque is an open-source Python package for automated analysis of virus plaque assays. It quantifies plaque morphology, size, and intensity from plate images, integrates with Python data tools, and enables reproducible, customizable workflows for high-throughput infection biology studies.
- Health
- Image processing
- Omics
- + 1
- Jupyter Notebook
- Python
quapps
is a software package containing a collection of exemplary application implementations based on quark.
- Discrete Optimization
- Ising Problem
- Optimization Problem
- + 3
- Python
- Jupyter Notebook
- Shell
Tigramite
Tigramite is a python package for causal inference with a focus on time series data. It allows to efficiently estimate causal graphs from high-dimensional time series datasets (causal discovery) and to use graphs for the estimation and prediction of direct, total, and mediated effects.
- causal inference
- python
- time series analysis
- Jupyter Notebook
- Python
CICMoD - A Climate Index Collection based on Model Data
The software provides a consistent and comprehensive collection of climate indices typically used to describe Earth System dynamics and serves as a new benchmark data set. It allows users to develop new machine learning methods and to compare their results to existing methods in an objective way.
- Earth & Environment
- FAIR Data
- Image processing
- + 1
- Jupyter Notebook
- Python
- Shell
- + 1
RAYX
Optical Simulation Software for Synchrotron Radiation
- C++
- open source
- python
- + 4
- C++
- Python
- CSS
- + 8
SciTS
A tool to benchmark Time-series on different databases.
- Benchmark
- Benchmarking
- database
- + 3
- Jupyter Notebook
- HTML
- C#
- + 2
VASCA
The VAriable Source Cluster Analysis (VASCA) is an astronomy pipeline for time-variable sources.
- Astronomy
- catalogue
- Data analysis
- + 6
- Jupyter Notebook
- Python
Batchgenerators
- 2D
- 3D
- data augmentation
- + 3
- Jupyter Notebook
- Python
DataDesc
The framework surrounding DataDesc, a metadata schema for software documentation with focus on interfaces, comes with a machine-actionable metadata exchange format and a software toolkit supporting the documentation, extraction and publication of software metadata.
- data managment
- ESD
- FAIR Data
- + 4
- Python
- Shell
- Jupyter Notebook
DeepTrees🌳
Tree Crown Segmentation and Analysis in Remote Sensing Imagery with PyTorch
- Deep Learning
- Earth & Environment
- open source
- + 3
- Jupyter Notebook
- Python
- Shell
- + 1
EL-PASO
EL-PASO is a Python framework designed to streamline the download, processing, and saving of satellite particle observation data.
- Data analysis
- FAIR Data
- metadata
- + 1
- Python
- Jupyter Notebook
- Shell
ETHOS.REFLOW
REFLOW is a workflow manager tool designed to streamline and automate tasks related to renewable energy potential analyses.
- ESD
- ESD - Topic 1
- Python
- Shell
- Jupyter Notebook