All software
DeBCR
DeBCR is a sparsity-efficient deep learning framework for denoising, deblurring, and deconvolving fluorescence microscopy images. Using the m-rBCR model, it restores structural details and improves resolution. It is available as a Python package and napari plugin for efficient image restoration.
- deblurring
- deconvolution
- Deep Learning
- + 3
- Python
- Jupyter Notebook
DeepTrees🌳
Tree Crown Segmentation and Analysis in Remote Sensing Imagery with PyTorch
- Deep Learning
- Earth & Environment
- open source
- + 3
- Jupyter Notebook
- Python
- Shell
- + 1
EL-PASO
EL-PASO is a Python framework designed to streamline the download, processing, and saving of satellite particle observation data.
- Data analysis
- FAIR Data
- metadata
- + 1
- Python
- Jupyter Notebook
- Shell
ETHOS.REFLOW
REFLOW is a workflow manager tool designed to streamline and automate tasks related to renewable energy potential analyses.
- ESD
- ESD - Topic 1
- Python
- Shell
- Jupyter Notebook
FESOM
FESOM (Finite-Element/volumE Sea ice-Ocean Model) is a multi-resolution sea ice-ocean model that solves the equations of motion on unstructured meshes.
- climate modelling
- Earth & Environment
- exascale
- + 5
- Fortran
- Jupyter Notebook
- C
- + 10
ETHOS.HiSim - Household Infrastructure and Building Simulator
ETHOS.HiSim is a Python package for simulation and analysis of household scenarios and building systems using modern components as alternative to fossil fuel based ones. This package integrates load profiles generation of electricity consumption, heating demand, electricity generation.
- ESD
- ESD - Topic 1
- Modeling
- + 2
- Python
- Jupyter Notebook
- TeX
- + 3
InteractiveVis
The InteractiveVis software framework provides a blueprint for evaluating 3D datasets with convolutional neural networks (CNNs), and for deriving and visualizing CNN relevance maps. This tool was developed and tested for disease detection in MRI scans. We plan to extend it to other domains.
- Data Visualization
- MRI
- open source
- + 1
- Jupyter Notebook
- HTML
- MATLAB
- + 5
LabFrog
Configurable python-Flask application for structured data capture and exploration.
- FAIR Data
- FAIR Software
- Flask
- + 2
- Python
- HTML
- JavaScript
- + 2
Minion
Minion is an optimization library designed for solving complex optimization problems where gradients are unavailable or unreliable. It implements state-of-the-art evolutionary algorithms which are often missing in standard optimization libraries.
- C++
- optimization
- python
- C++
- Python
- Jupyter Notebook
- + 4
NetworKit
NetworKit is a growing open-source toolkit for large-scale network analysis. Its aim is to provide tools for the analysis of large networks in the size range from thousands to billions of edges. It implements efficient graph algorithms, many of them parallel to utilize multicore architectures.
- C++
- Cython
- Python
- + 9
novoSpaRc
novoSpaRc predicts locations of single cells in space by solely using single-cell RNA sequencing data. An existing reference database of marker genes is not required, but significantly enhances performance if available.
- Data analysis
- open source
- single-cell RNA-seq
- Jupyter Notebook
- HTML
- Python
ParFlow
ParFlow is a parallel, integrated hydrology model that simulates spatially distributed surface and subsurface flow.
- Earth System Modelling
- High performance computing
- Hydrology
- + 2
- C
- Tcl
- Python
- + 17