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CiTYCHEM

The CiTYCHEM extension of the EPISODE dispersion model is designed for treating complex atmospheric chemistry in urban areas and improved representation of the near-field dispersion. Applications are urban air quality studies, environmental impact assessments and sector-specific emission studies.

Air Pollution
Air quality
Earth & Environment
+ 6

RiboDetector

RiboDetector is designed to rapidly and accurately detect rRNA sequences from metagenomic, metatranscriptomic, and ncRNA sequencing data. It has been optimized for use with both CPUs and GPUs. It outperforms existing software by delivering 10-50x faster runtime and ~10x fewer false classifications.

Data analysis
FAIR Data
Genomics
+ 3

Python

KaGen - Communication-free Massively Distributed Graph Generators

Network generators help to provide synthethic instances with controllable parameters by algorithm developers and researchers. KaGen provides generators for a large variety of network models, which are communication-free by making use of pseudorandomization and divide-and-conquer schemes.

Graph Generation
High performance computing
Network Analysis
+ 1

C
C++
CMake
+ 2

FatSegNet

A fully automated deep learning pipeline for adipose tissue (visceral and subcutaneous) segmentation on abdominal Dixon MRI.

Data analysis
MRI
open source

Python
Dockerfile
Shell

VarFish

VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...

Annotation
Data analysis
Health
+ 1

Python
Vue
TypeScript
+ 9

MFDFA

The Python package `MFDFA` provides the tools to perform a multifractal detrended fluctuation analysis that enables the investigation of stochastic processes where long-range memory and persistence are necessary to consider.

Data analysis
Energy
ESD
+ 3

Python

MeshIt

The tool MeshIT generates quality tetrahedral meshes based on structural geological information. It has been developed at the GFZ Potsdam and some extensions were later added by PERFACCT. All procedures are fully automatized and require at least scattered data points as input.

3D meshing
Delaunay tetrahedralization
Delaunay triangulation
+ 2

C++
C
QMake

UrbEm - Urban Emission downscaling for air quality modeling

UrbEm enables in a modular manner downscaling of gridded regional emissions with specific spatial proxies based on a variety of open access, robust, sustainable and frequently updated sources. UrbEm can be applied to any urban area in Europe and provides methodological homogeneity between cities.

Air quality
Chemistry Transport Modeling
Earth & Environment
+ 2

Python
R

Medical Imaging Interaction Toolkit (MITK)

A free and open-source software for the development of interactive medical image processing applications. MITK provides a powerful and free application called the MITK Workbench, which allows users to view, process, and segment medical images.

Artificial Intelligence
C++
Data Visualization
+ 7

C++
CMake
C
+ 8

COMANDO

COMANDO is a next generation modeling framework for Component-Oriented Modeling and optimizAtion for Nonlinear Design and Operation of integrated energy systems.

Energy
ESD
ESD - Topic 2

Python

TiGL

TiGL is a parametric aircraft geometry modeler. Using the CPACS file format and TiGL, you can model a wide range of aircraft, spacecraft and rotorcraft.

C++
C
CMake
+ 8

cola

Subgroup classification is a basic task in genomic data analysis. The cola package provides a general framework for subgroup classification by consensus partitioning.

Data analysis
Data Visualization
FAIR Data
+ 3

HTML
R
C++