German Cancer Research Center
2x2, 3x3 and nxn Space-Filling Curves
Implementation of all possible forms of 2x2 and 3x3 space-filling curves, and nxn curves expanded from any specific level-1 units. It also implements the H-curve and the three-dimensional Hilbert curve.
- Data analysis
- Data Visualization
- open source
- R
- C++
- C
circlize
Circular layout is an efficient way for the visualization of huge amounts of information. The circlize package provides an implementation of circular layout generation in R.
- Data analysis
- Data Science
- Data Visualization
- + 3
- R
cola
Subgroup classification is a basic task in genomic data analysis. The cola package provides a general framework for subgroup classification by consensus partitioning.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- C++
ComplexHeatmap
Complex heatmaps are efficient in visualizing associations between different sources of data sets and revealing potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.
- bioconductor
- Clustering
- Data Science
- + 3
- R
- CSS
EnrichedHeatmap
Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. The EnrichedHeatmap package provides advanced solutions for normalizing genomic signals within target regions as well as offering highly customizable visualizations.
- Data analysis
- Data Visualization
- FAIR Data
- + 2
- R
- CSS
- C++
HilbertCurve
Hilbert curve is a type of space-filling curves that fold one dimensional axis into a two dimensional space, but with still preserves the locality. This package aims to provide an easy and flexible way to visualize data through Hilbert curve.
- Data analysis
- Data Science
- Data Visualization
- + 3
- R
- C++
- CSS
- + 1
InteractiveComplexHeatmap
InteractiveComplexHeatmap is an R package that converts static heatmaps produced from ComplexHeatmap package into an interactive Shiny app only with one extra line of code.
- Data analysis
- Data Science
- Data Visualization
- + 3
- R
- JavaScript
- CSS
Kaapana
Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.
- data managment
- Federated Learning
- Image processing
- + 2
- Python
- Vue
- Shell
- + 14
maftools
maftools is a comprehensive toolkit for processing somatic variants from cohort-based cancer genomic studies
- cancer
- Classification
- Data analysis
- + 14
- R
- C
- CSS
Mainzelliste
Mainzelliste is an extensible web-based pseudonymisation tool used for generating and managing the pseudonyms from identifying data which supports multiple ways of secure, error-tolerant record linkage.
- Clinical-Research
- Patient Management
- Pseudonymization
- + 2
matRad
matRad is a dose calculation and inverse treatment planning toolkit for radiotherapy research and education written in Matlab.
- Health
- Medical Physics
- Particle Therapy
- + 2
- MATLAB
- TeX
- C++
Metrics Reloaded
The mission of Metrics Reloaded toolkit is to guide researchers in the selection of appropriate performance metrics for biomedical image analysis problems and to provide a comprehensive online resource for metric-related information and pitfalls.
- Algorithm Validation
- Problem-Aware Metric Selection
- Problem Fingerprint