Arbor
Arbor is a high-performance library for computational neuroscience simulations with multi-compartment, morphologically-detailed cells, from single cell models to very large networks. Arbor is written from the ground up to help neuroscientists effectively use contemporary and future HPC systems.
- GPU
- High performance computing
- Neural network
- + 4
- C++
- AGS Script
- Python
- + 7
BaSiC
BaSiC is a specialized MATLAB tool designed for the background and shading correction of optical microscopy images. BaSiC addresses critical challenges in image processing, thereby enhancing the quality and reliability of microscopy data.
- MATLAB
CellRank
CellRank is a computational framework to study cellular fate decisions based on various types of single-cell genomics data. CellRank scales to large cell numbers, is fully compatible with the scverse ecosystem, and is easy to use.
- Data analysis
- fate mapping
- fate prediction
- + 7
- Python
Earth System Model Evaluation Tool (ESMValTool)
- climate modelling
- Data analysis
- Earth & Environment
- + 4
- NCL
- Python
- R
- + 7
ESMValCore
- Data analysis
- Earth & Environment
- FAIR Software
- + 2
- Python
- Jupyter Notebook
- HTML
- + 5
SpatialData framework
SpatialData is an open and interoperable data framework for ingesting, representing, processing and visualizing spatial omics datasets.
- Data Visualization
- FAIR Data
- Multi omics
- + 3
- Python
- Dockerfile