VoltRon

Website and Tutorials: https://bioinformatics.mdc-berlin.de/VoltRon

VoltRon is a spatial omic analysis toolbox for multi-omics integration using spatial image registration. VoltRon is also capable of analyzing multiple types of spatially-aware data modalities.

Staying up-to-date

To ask questions please use VoltRon discussion forum on google groups.

• https://groups.google.com/forum/#!forum/voltron_discussion

Installation

Install from the GitHub repository using devtools (with R version 4.3.0 or higher):

if (!require("devtools", quietly = TRUE))
    install.packages("devtools")
devtools::install_github("BIMSBbioinfo/VoltRon")

Depending on the number of required dependencies, installation may be completed under a minute or may take a few minutes.

On Windows and MacOS, OpenCV will be downloaded automatically upon installation. However, Rtools may be required to be downloaded too, hence this may take some time!

On Ubuntu we provide a set of instructions that may help users to build OpenCV with necessary headers here.

On Fedora you may need opencv-devel:

yum install opencv-devel

Tutorials

Please see the Explore section in the VoltRon website for tutorials, example scripts and analysis found in the preprint. Tutorials include links for accessing necessary data to run scripts across all tutorials.

References

Manukyan, A., Bahry, E., Wyler, E., Becher, E., Pascual-Reguant, A., Plumbom, I., ... & Akalin, A. (2023). VoltRon: A Spatial Omics Analysis Platform for Multi-Resolution and Multi-omics Integration using Image Registration. bioRxiv, 2023-12.