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HIFIS Software Spotlights
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1-12 of 76
Cover image for QUAST

QUAST

QUAST is a state-of-the-art tool for (meta)genome assembly evaluation, computing over 50 quality metrics and presenting results in plain text, static plots, and interactive HTML reports.

  • Data Visualization
  • FAIR Software
  • Genome assembly
  • + 4
  • AMPL
  • C++
  • Python
  • + 12
4
9398
Cover image for CP2K

CP2K

CP2K is a quantum chemistry and solid state physics software package running on graphics processing units and thousands of processing units. It is open-source and allows simulations, spectroscopy, vibrational analysis and energy minimization on a vast variety of theory levels.

  • electronic structure
  • GPU
  • High performance computing
  • + 5
  • Fortran
  • C
  • Python
  • + 13
8
2151
Cover image for OpenGeoSys

OpenGeoSys

OpenGeoSys (OGS) is a scientific open source project for the development of numerical methods for the simulation of thermo-hydro-mechanical-chemical (THMC) processes in porous and fractured media.

  • Earth & Environment
  • geotechnics
  • geothermal modeling
  • + 5
  • C++
  • Jupyter Notebook
  • AGS Script
  • + 2
69
664
Cover image for NEST

NEST

NEST is a simulator for spiking neuronal networks. A well tested and efficient tool, NEST works on your laptop and also on the world’s largest supercomputers to study behaviour of large networks of neurons.

  • Computational neuroscience
  • exascale
  • Modeling
  • + 3
  • C++
  • Python
  • CMake
  • + 3
119
542
Cover image for JPlag

JPlag

JPlag is one of the most popular source code plagiarism detection systems worldwide.

  • Automated Obfuscation Attack
  • Collusion Detection
  • Data analysis
  • + 9
  • Java
  • ANTLR
  • Rust
  • + 15
7
532
Cover image for Score-P

Score-P

Score-P provides insight into massively parallel HPC applications, their communication, synchronization, I/O, and scaling behaviour to pinpoint performance bottlenecks and their causes.

  • hpc
  • Information
  • instrumentation
  • + 5
  • C
  • C++
  • M4Sugar
  • + 2
39
467
Cover image for PeTrack

PeTrack

PeTrack (Pedestrian Tracking) automatically extracts accurate pedestrian trajectories from video recordings (calibration, recognition, tracking). Individual codes enable personalized trajectories with static information of each participant. With a stereo camera also markerless tracking is possible.

  • Annotation
  • Calibration
  • Computer Vision
  • + 17
  • C++
  • Python
  • CMake
  • + 2
16
466
Cover image for CADET

CADET

CADET provides hierarchical models, efficient solvers and computational engineering tools for a range of biotechnological processes, including chromatography, filtration, crystallization, and fermentation.

  • adsorption
  • chromatography
  • compartment modelling
  • + 4
  • C++
  • CMake
  • C
  • + 1
15
272
Cover image for matRad

matRad

matRad is a dose calculation and inverse treatment planning toolkit for radiotherapy research and education written in Matlab.

  • Health
  • Medical Physics
  • Particle Therapy
  • + 2
  • MATLAB
  • TeX
  • C++
1
225
Cover image for openCARP

openCARP

openCARP is a multiscale cardiac electrophysiology simulator for in silico experiments ranging from single heart cells and cardiac tissue to organ models up to the body surface ECG.

  • computational cardiology
  • digital twin
  • electrophysiology
  • + 3
  • C++
  • Python
  • C
  • + 2
33
185
Cover image for EnrichedHeatmap

EnrichedHeatmap

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. The EnrichedHeatmap package provides advanced solutions for normalizing genomic signals within target regions as well as offering highly customizable visualizations.

  • Data analysis
  • Data Visualization
  • FAIR Data
  • + 2
  • R
  • CSS
  • C++
1
184
Cover image for GOLEM

GOLEM

GOLEM is a modelling platform for thermal-hydraulic-mechanical and non-reactive chemical processes in fractured and faulted porous media, based on the MOOSE framework

  • Earth & Environment
  • Multiphysics of porous fractured rocks
  • reservoir behaviour and induced seismicity
  • + 1
  • C++
  • SWIG
  • Assembly
  • + 5
3
134