HIFIS Software Spotlights

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Logo for ComplexHeatmap

ComplexHeatmap

Complex heatmaps are efficient in visualizing associations between different sources of data sets and revealing potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

  • bioconductor
  • Clustering
  • Data Science
  • + 3
  • R
  • CSS
1
9021
Logo for maftools

maftools

maftools is a comprehensive toolkit for processing somatic variants from cohort-based cancer genomic studies

  • cancer
  • Classification
  • Data analysis
  • + 14
  • R
  • C
  • CSS
1
3761
Logo for circlize

circlize

Circular layout is an efficient way for the visualization of huge amounts of information. The circlize package provides an implementation of circular layout generation in R.

  • Data analysis
  • Data Science
  • Data Visualization
  • + 3
  • R
1
3551
Logo for anvi'o

anvi'o

anvi'o is an open-source software platform for microbial 'omics research enabling analysis and visualization of 'omics data. In development since 2014, it is currently being maintained by the Ecosystem Data Science group at the Helmholtz Institute for Functional Marine Biodiversity.

  • Data analysis
  • Data Visualization
  • Metagenomics
  • + 4
  • Python
  • JavaScript
  • HTML
  • + 5
6
2358
Logo for JPlag

JPlag

JPlag is one of the most popular source code plagiarism detection systems worldwide.

  • Automated Obfuscation Attack
  • Collusion Detection
  • Data analysis
  • + 9
  • Java
  • ANTLR
  • Vue
  • + 16
9
544
Logo for Earth System Model Evaluation Tool (ESMValTool)

Earth System Model Evaluation Tool (ESMValTool)

  • climate modelling
  • Data analysis
  • Earth & Environment
  • + 4
  • NCL
  • Python
  • R
  • + 7
89
271
Logo for MIRP

MIRP

MIRP is a python package for quantitative analysis of medical images. It focuses on processing images for integration with radiomics workflows. These workflows either use quantitative features computed using MIRP, or directly use MIRP to process images as input for deep learning models.

  • Medical Image Processing
  • python
  • radiomics
  • Python
  • Jupyter Notebook
  • R
  • + 2
3
227
Logo for EnrichedHeatmap

EnrichedHeatmap

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. The EnrichedHeatmap package provides advanced solutions for normalizing genomic signals within target regions as well as offering highly customizable visualizations.

  • Data analysis
  • Data Visualization
  • FAIR Data
  • + 2
  • R
  • CSS
  • C++
1
213

CoMOLA

CoMOLA is a python tool for optimal spatial allocation of land uses. The tool creates optimal land-use maps for up to four objectives. It takes into account constraints and can be coupled with external models to evaluate different objectives (e.g. ecosystem services/biodiversity models)

  • land-use allocation
  • multi-objective optimization
  • NSGA-II
  • Python
  • R
4
207
Logo for InteractiveComplexHeatmap

InteractiveComplexHeatmap

InteractiveComplexHeatmap is an R package that converts static heatmaps produced from ComplexHeatmap package into an interactive Shiny app only with one extra line of code.

  • Data analysis
  • Data Science
  • Data Visualization
  • + 3
  • R
  • JavaScript
  • CSS
1
203
Logo for simplifyEnrichment

simplifyEnrichment

A new clustering algorithm, "binary cut", for clustering similarity matrices of functional terms is implemeted in this package. It also provides functions for visualizing, summarizing and comparing the clusterings.

  • Data analysis
  • Data Visualization
  • FAIR Data
  • + 3
  • R
  • CSS
1
201
Logo for ESMValCore

ESMValCore

  • Data analysis
  • Earth & Environment
  • FAIR Software
  • + 2
  • Python
  • Jupyter Notebook
  • HTML
  • + 5
46
113