All software
ComplexHeatmap
Complex heatmaps are efficient in visualizing associations between different sources of data sets and revealing potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.
- bioconductor
- Clustering
- Data Science
- + 3
- R
- CSS
maftools
maftools is a comprehensive toolkit for processing somatic variants from cohort-based cancer genomic studies
- cancer
- Classification
- Data analysis
- + 14
- R
- C
- CSS
circlize
Circular layout is an efficient way for the visualization of huge amounts of information. The circlize package provides an implementation of circular layout generation in R.
- Data analysis
- Data Science
- Data Visualization
- + 3
- R
anvi'o
anvi'o is an open-source software platform for microbial 'omics research enabling analysis and visualization of 'omics data. In development since 2014, it is currently being maintained by the Ecosystem Data Science group at the Helmholtz Institute for Functional Marine Biodiversity.
- Data analysis
- Data Visualization
- Metagenomics
- + 4
- Python
- JavaScript
- HTML
- + 5
JPlag
JPlag is one of the most popular source code plagiarism detection systems worldwide.
- Automated Obfuscation Attack
- Collusion Detection
- Data analysis
- + 9
- Java
- ANTLR
- Vue
- + 16
Earth System Model Evaluation Tool (ESMValTool)
- climate modelling
- Data analysis
- Earth & Environment
- + 4
- NCL
- Python
- R
- + 7
MIRP
MIRP is a python package for quantitative analysis of medical images. It focuses on processing images for integration with radiomics workflows. These workflows either use quantitative features computed using MIRP, or directly use MIRP to process images as input for deep learning models.
- Medical Image Processing
- python
- radiomics
- Python
- Jupyter Notebook
- R
- + 2
EnrichedHeatmap
Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. The EnrichedHeatmap package provides advanced solutions for normalizing genomic signals within target regions as well as offering highly customizable visualizations.
- Data analysis
- Data Visualization
- FAIR Data
- + 2
- R
- CSS
- C++
CoMOLA
CoMOLA is a python tool for optimal spatial allocation of land uses. The tool creates optimal land-use maps for up to four objectives. It takes into account constraints and can be coupled with external models to evaluate different objectives (e.g. ecosystem services/biodiversity models)
- land-use allocation
- multi-objective optimization
- NSGA-II
- Python
- R
simplifyEnrichment
A new clustering algorithm, "binary cut", for clustering similarity matrices of functional terms is implemeted in this package. It also provides functions for visualizing, summarizing and comparing the clusterings.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- CSS
InteractiveComplexHeatmap
InteractiveComplexHeatmap is an R package that converts static heatmaps produced from ComplexHeatmap package into an interactive Shiny app only with one extra line of code.
- Data analysis
- Data Science
- Data Visualization
- + 3
- R
- JavaScript
- CSS
ESMValCore
- Data analysis
- Earth & Environment
- FAIR Software
- + 2
- Python
- Jupyter Notebook
- HTML
- + 5