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Cover image for Rankings Reloaded

Rankings Reloaded

Rankings Reloaded is an open-source toolkit for robust and accurate benchmark visualization and ranking. It is an out-of-the-box and open-source framework for analyzing and visualizing algorithm results in an accurate way. It uses challengeR and brings advantages of it with user-friendly interface.

  • Data analysis
  • Data Visualization
  • Information
  • + 1
  • R
3
1
Cover image for RiboDetector

RiboDetector

RiboDetector is designed to rapidly and accurately detect rRNA sequences from metagenomic, metatranscriptomic, and ncRNA sequencing data. It has been optimized for use with both CPUs and GPUs. It outperforms existing software by delivering 10-50x faster runtime and ~10x fewer false classifications.

  • Data analysis
  • FAIR Data
  • Genomics
  • + 3
  • Python
4
8
Cover image for SaQC

SaQC

A consistent, extensible, easy-to-use tool/framework for reproducible quality control of time series data.

  • Data analysis
  • Earth & Environment
  • Quality control
  • + 1
  • Python
0
0
Cover image for scanpy

scanpy

Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.

  • bioinformatics
  • Data analysis
  • python
  • Python
  • R
3
1
Cover image for UltraMassExplorer (UME)

UltraMassExplorer (UME)

Natural organic matter is the most complex chemical mixture on our planet. UME is an open access, browser-based tool that allows efficient, interactive, transparent, and reproducible exploration and evaluation of ultrahigh resolution mass spectra of complex organic matter.

  • analytical chemistry
  • Carbon cycle
  • Data analysis
  • + 7
  • R
3
32
Cover image for VarFish

VarFish

VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...

  • Annotation
  • Data analysis
  • Health
  • + 1
  • Python
  • Vue
  • JavaScript
  • + 8
14
41