All software

BrainPrint

Our BrainPrint tools provide shape descriptors of neuroanatomical structures and require a FreeSurfer or FastSurfer segmentation as a pre-processing step. BrainPrint is based on “ShapeDNA” a spectral shape descriptor.

ESMValCore

rGREAT

GREAT is a type of functional enrichment analysis directly performed on genomic regions. This package implements the GREAT algorithm, also it supports directly interacting with the GREAT web service (the online GREAT analysis). Both analysis can be viewed by a Shiny application.

RiboDetector

RiboDetector is designed to rapidly and accurately detect rRNA sequences from metagenomic, metatranscriptomic, and ncRNA sequencing data. It has been optimized for use with both CPUs and GPUs. It outperforms existing software by delivering 10-50x faster runtime and ~10x fewer false classifications.

MFDFA

The Python package `MFDFA` provides the tools to perform a multifractal detrended fluctuation analysis that enables the investigation of stochastic processes where long-range memory and persistence are necessary to consider.

VarFish

VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...

FatSegNet

A fully automated deep learning pipeline for adipose tissue (visceral and subcutaneous) segmentation on abdominal Dixon MRI.

cola

Subgroup classification is a basic task in genomic data analysis. The cola package provides a general framework for subgroup classification by consensus partitioning.

HilbertCurve

Hilbert curve is a type of space-filling curves that fold one dimensional axis into a two dimensional space, but with still preserves the locality. This package aims to provide an easy and flexible way to visualize data through Hilbert curve.

kramersmoyal

The Python package `kramersmoyal` provides functions to analyze stochastic drift-diffusion and discontinuous stochastic processes in observational and experimental data.

UltraMassExplorer (UME)

Natural organic matter is the most complex chemical mixture on our planet. UME is an open access, browser-based tool that allows efficient, interactive, transparent, and reproducible exploration and evaluation of ultrahigh resolution mass spectra of complex organic matter.

Heat

Heat is a flexible and seamless open-source software for high performance data analytics and machine learning. It provides highly optimized algorithms and data structures for tensor computations using CPUs, GPUs and distributed cluster systems on top of MPI.