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49-53 of 53

novoSpaRc

novoSpaRc predicts locations of single cells in space by solely using single-cell RNA sequencing data. An existing reference database of marker genes is not required, but significantly enhances performance if available.

Data analysis
open source
single-cell RNA-seq

Jupyter Notebook
HTML
Python

PeakPerformance

PeakPerformance is a Python toolbox for estimating peak areas from mass-spectrometry or HPLC datasets under uncertainty. It applies Bayesian inference using the PyMC library to parametric models of peak curves.

Data analysis
Earth & Environment
mass spectrometry
+ 4

Python
TeX

simona

This package implements infrastructures for ontology analysis by offering efficient data structures, fast ontology traversal methods, and elegant visualizations. It provides a robust toolbox supporting over 70 methods for semantic similarity analysis.

Data analysis
Data Visualization
FAIR Data
+ 3

R
C++
JavaScript
+ 3

Timeseries Management

The Timeseries Management allows to store, visualise, organise and share timeseries data and provides access to a (broad) selection of data from different long-term projects and campaigns (e.g. TERENO, MOSES).

Data analysis
Data Visualization
Earth & Environment
+ 2

UTILE-Oxy

Automated workflow using deep learning for the analysis of videos containing oxygen bubbles in PEM electrolyzers: 1. preparing annotated dataset and training models to conduct semantic seg- mentation of bubbles and 2. automating the extraction of bubble properties for further distribution analysis.

bubbles
Data analysis
Data Visualization
+ 7

Python
Jupyter Notebook