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KinFit

KinFit can be used for kinematic fitting in particle and hadron physics experiments. The iterative procedure is based on the Langrange multiplier technique. Constraints such as mass, vertex and momentum conservation are included.

C++
Data analysis
open source

C++
C
CMake

Mibianto

Mibianto is an easy to use web service for efficient compositional analysis of metagenomic sequencing data. By using FracMinHash on client side the uploaded sequence data is anonymized and drastically reduced in size.

Data analysis
Metagenomics
Web application
+ 1

micromechanics-indentationGUI

Graphical User Interface (GUI) software for analyzing nanoindentation experimental data

Data analysis
Data Visualization
Energy
+ 5

Python

novoSpaRc

novoSpaRc predicts locations of single cells in space by solely using single-cell RNA sequencing data. An existing reference database of marker genes is not required, but significantly enhances performance if available.

Data analysis
open source
single-cell RNA-seq

Jupyter Notebook
HTML
Python

PeakPerformance

PeakPerformance is a Python toolbox for estimating peak areas from mass-spectrometry or HPLC datasets under uncertainty. It applies Bayesian inference using the PyMC library to parametric models of peak curves.

Data analysis
Earth & Environment
mass spectrometry
+ 4

Python
TeX

simona

This package implements infrastructures for ontology analysis by offering efficient data structures, fast ontology traversal methods, and elegant visualizations. It provides a robust toolbox supporting over 70 methods for semantic similarity analysis.

Data analysis
Data Visualization
FAIR Data
+ 3

R
C++
JavaScript
+ 3

Timeseries Management

The Timeseries Management allows to store, visualise, organise and share timeseries data and provides access to a (broad) selection of data from different long-term projects and campaigns (e.g. TERENO, MOSES).

Data analysis
Data Visualization
Earth & Environment
+ 2

UTILE-Oxy

Automated workflow using deep learning for the analysis of videos containing oxygen bubbles in PEM electrolyzers: 1. preparing annotated dataset and training models to conduct semantic seg- mentation of bubbles and 2. automating the extraction of bubble properties for further distribution analysis.

bubbles
Data analysis
Data Visualization
+ 7

Python
Jupyter Notebook