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HIFIS Software Spotlights

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1-12 of 19

DataLad

DataLad is a tool for the joint management of code, data, and their relationship, built on top of the version control systems Git & git-annex. It adapts principles of open-source software development & distribution to address challenges of data management, data sharing, & digital provenance capture.

DataLad
data managment
data sharing
+ 8

Python
Shell
Makefile
+ 4

226

HELIPORT

The guidance system HELIPORT aims to make the entire life cycle of a scientific project according to the FAIR principles. In particular, our data management solution deals with the areas from the generation of the data to the publication of primary research data, the workflows and results.

data managment
Earth & Environment
Energy
+ 10

Python
HTML
JavaScript
+ 2

Kaapana

Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.

data managment
Federated Learning
Image processing
+ 2

Python
Shell
Vue
+ 12

t8code

t8code (spoken as "tetcode") is a C/C++ library to manage parallel adaptive meshes with various element types. t8code uses a collection (a forest) of multiple connected adaptive space-trees in parallel and scales to at least one million MPI ranks and over 1 trillion mesh elements.

data managment
Data Visualization
exascale
+ 3

C++
C
Makefile
+ 7

shepard

shepard is a multi-database storage system for highly heterogenous experimental research data. Simple connection options via standardized interfaces enable the automated recording of data including an annotation with meta information.

Aeronautics, Space and Transport
data managment
Industry 4.0
+ 1

AiiDA-Spirit

AiiDA plugin for FAIR high-throughput spin-dynamics simulations with the Spirit code (http://spirit-code.github.io/).

data managment
Data Visualization
FAIR Data
+ 5

JavaScript
Python
HTML
+ 1

stream2segment

A Python library and command line application to download, process and visualize event-based seismic waveform segments, specifically designed to manage big volumes of data

Big data
data managment
Data Visualization
+ 5

Python
Jupyter Notebook
HTML
+ 1

cnpy++

cnpy++ is a C++17 library that allows to read and write NumPy data files (.npy and .npz). It is designed in a way to integrate well into the modern C++ ecosystem and it provides features not available in any similar C++/npy library.

data managment

C++
CMake
C

dCache

dCache is a system for storing and retrieving huge amounts of scientific data, distributed among a large number of heterogeneous server nodes, under a single virtual filesystem tree with a variety of standard access methods including NFSv4.1 (pNFS), FTP, WebDav and xroot.

data managment
FAIR Data

Java
JavaScript
XSLT
+ 14

SciTS

A tool to benchmark Time-series on different databases.

Benchmark
Benchmarking
database
+ 3

Jupyter Notebook
HTML
C#
+ 2

anndata

anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and a PyTorch interface.

bioinformatics
data managment
FAIR Data
+ 1

Python

base-repo

Base-repo is a generic, domain-agnostic research data repository suitable to store and manage all kinds of research data. Its content is organized as DataResources, which consist of descriptive DataCite-compliant Metadata and one or more data elements, either stored as files or linked by reference.

Datacite
data managment
FAIR Data
+ 1

Java
Shell
Dockerfile