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13-24 of 80

BrainPrint

Our BrainPrint tools provide shape descriptors of neuroanatomical structures and require a FreeSurfer or FastSurfer segmentation as a pre-processing step. BrainPrint is based on “ShapeDNA” a spectral shape descriptor.

Data analysis
MRI
open source
+ 1

Python

113

InteractiveComplexHeatmap

InteractiveComplexHeatmap is an R package that converts static heatmaps produced from ComplexHeatmap package into an interactive Shiny app only with one extra line of code.

Data analysis
Data Science
Data Visualization
+ 3

R
JavaScript
CSS

112

rGREAT

GREAT is a type of functional enrichment analysis directly performed on genomic regions. This package implements the GREAT algorithm, also it supports directly interacting with the GREAT web service (the online GREAT analysis). Both analysis can be viewed by a Shiny application.

Data analysis
Data Visualization
FAIR Data
+ 3

alpaka

The alpaka library is a header-only C++17 abstraction framework designed for computing accelerator development. It enables developers to implement algorithms once and execute them across a range of platforms, including x86, ARM, and RISC-V CPUs, as well as accelerators from NVIDIA, AMD, and Intel.

C++
CPU
CUDA
+ 7

C++
CMake
Shell
+ 1

oemof.solph

oemof.solph is a model generator for energy system modelling and optimisation. It facilitates the formulation of (mixed-integer) linear programs from a generic graph-based structure, allowing to create multi-sector models on different levels of detail with user-defined time-resolution.

Energy
Energy System Analysis
ESD
+ 2

Python
Batchfile

CiTYCHEM

The CiTYCHEM extension of the EPISODE dispersion model is designed for treating complex atmospheric chemistry in urban areas and improved representation of the near-field dispersion. Applications are urban air quality studies, environmental impact assessments and sector-specific emission studies.

Air Pollution
Air quality
Earth & Environment
+ 6

FatSegNet

A fully automated deep learning pipeline for adipose tissue (visceral and subcutaneous) segmentation on abdominal Dixon MRI.

Data analysis
MRI
open source

Python
Dockerfile
Shell

cola

Subgroup classification is a basic task in genomic data analysis. The cola package provides a general framework for subgroup classification by consensus partitioning.

Data analysis
Data Visualization
FAIR Data
+ 3

HTML
R
C++

HilbertCurve

Hilbert curve is a type of space-filling curves that fold one dimensional axis into a two dimensional space, but with still preserves the locality. This package aims to provide an easy and flexible way to visualize data through Hilbert curve.

Data analysis
Data Science
Data Visualization
+ 3

Aviator

Aviator is a web service facilitating easy surveillance of scientific online tools. It currently checks more than 13,000 websites twice a day for availability and saves numerous features (response time, RAM usage security certificates, analytic tools / trackers, etc.) in a FAIR data repository.

Data Visualization
FAIR Data
FAIR Software
+ 8

Python
HTML
JavaScript
+ 5

SeisBench: A toolbox for machine learning in seismology

SeisBench is an open-source Python toolbox for machine learning in seismology. It brings together the whole machine learning model lifecycle: datasets and benchmarks, models and training pipelines, and efficient implementations for deploying the models in production.

Earth & Environment
GPU
Helmholtz AI
+ 4

Jupyter Notebook
Python

LaPy

LaPy is an open-source Python package for differential geometry on triangle and tetrahedra meshes. It includes an FEM solver to estimate the Laplace, Poisson or Heat equations, also the computations of gradients, divergence, mean-curvature flow, conformal mappings, geodesics, ShapeDNA and more.

computational geometry
FEM
Laplace
+ 4

Python