MEmilio
MEmilio implements various models for infectious disease dynamics, from compartmental to agent-based models. Through efficient implementation and parallelization, MEmilio brings cutting edge and compute intensive models to a large scale, enabling high-resolution spatiotemporal disease dynamics.
Cite this software
Description
MEmilio implements various models for infectious disease dynamics, from simple compartmental models through Integro-Differential equation-based models to agent- or individual-based models. Its modular design allows the combination of different models with different mobility patterns. Through efficient implementation and parallelization, MEmilio brings cutting edge and compute intensive epidemiological models to a large scale, enabling a precise and high-resolution spatiotemporal infectious disease dynamics. MEmilio is actively developed by over 10 developers. It is available open-source.
Participating organisations
Reference papers
- 1.Author(s): Julia Bicker, René Schmieding, Michael Meyer-Hermann, Martin J. KühnPublished in Infectious Disease Modelling by Elsevier BV in 2025, page: 571-59010.1016/j.idm.2024.12.015
- 2.Author(s): Henrik Zunker, René Schmieding, David Kerkmann, Alain Schengen, Sophie Diexer, Rafael Mikolajczyk, Michael Meyer-Hermann, Martin J. KühnPublished in PLOS Computational Biology by Public Library of Science (PLoS) in 2024, page: e101263010.1371/journal.pcbi.1012630
- 3.Author(s): Martin J. Kühn, Daniel Abele, Sebastian Binder, Kathrin Rack, Margrit Klitz, Jan Kleinert, Jonas Gilg, Luca Spataro, Wadim Koslow, Martin Siggel, Michael Meyer-Hermann, Achim BasermannPublished in BMC Infectious Diseases by Springer Science and Business Media LLC in 202210.1186/s12879-022-07302-9
- 4.Author(s): Wadim Koslow, Martin J. Kühn, Sebastian Binder, Margrit Klitz, Daniel Abele, Achim Basermann, Michael Meyer-HermannPublished in PLOS Computational Biology by Public Library of Science (PLoS) in 2022, page: e101005410.1371/journal.pcbi.1010054
- 5.Author(s): Martin J. Kühn, Daniel Abele, Tanmay Mitra, Wadim Koslow, Majid Abedi, Kathrin Rack, Martin Siggel, Sahamoddin Khailaie, Margrit Klitz, Sebastian Binder, Luca Spataro, Jonas Gilg, Jan Kleinert, Matthias Häberle, Lena Plötzke, Christoph D. Spinner, Melanie Stecher, Xiao Xiang Zhu, Achim Basermann, Michael Meyer-HermannPublished in Mathematical Biosciences by Elsevier BV in 2021, page: 10864810.1016/j.mbs.2021.108648
Mentions
- 1.Author(s): Arit Kumar Bishwas, Anand RaoPublished in Machine Learning Perspectives of Agent-Based Models by Springer Nature Switzerland in 2025, page: 51-7610.1007/978-3-031-73354-3_3
- 2.Author(s): Fatemeh Mirsaeedi, Mohammad Sheikhalishahi, Mehrdad Mohammadi, Dmitry IvanovPublished in International Series in Operations Research & Management Science, Handbook of Ripple Effects in the Supply Chain by Springer Nature Switzerland in 2025, page: 249-33010.1007/978-3-031-85508-5_12
- 3.Author(s): Michael Meyer-HermannPublished in Weshalb auf die Wissenschaft hören? by Springer Berlin Heidelberg in 2022, page: 95-12210.1007/978-3-662-65688-4_4
- 1.Author(s): Shahbaz Memon, Johann F. Jadebeck, Michael Osthege, Anna Wendler, David Kerkmann, Henrik Zunker, Wolfgang Wiechert, Katharina Nöh, Jens Henrik Göbbert, Björn Hagemeier, Morris Riedel, Martin J. KühnPublished in 2024 47th MIPRO ICT and Electronics Convention (MIPRO) by IEEE in 2024, page: 1157-116210.1109/mipro60963.2024.10569336
- 2.Author(s): Pawandeep Kaur Betz, Julien Stoll, Valerie Grappendorf, Jonas Gilg, Moritz Zeumer, Margrit Klitz, Luca Spataro, Anna Klein, Lena Rothenhaeusler, Hartmut Bohnacker, Hans Kraemer, Michael Meyer-Hermann, Sybille Somogyi, Andreas Gerndt, Martin J. KühnPublished in 2023 IEEE VIS Workshop on Visualization for Pandemic and Emergency Responses (Vis4PandEmRes) by IEEE in 2023, page: 8-1410.1109/vis4pandemres60343.2023.00007
- 1.Author(s): Lena Plötzke, Anna Wendler, René Schmieding, Martin J. KühnPublished in Mathematics and Computers in Simulation by Elsevier BV in 2026, page: 823-84410.1016/j.matcom.2025.07.045
- 2.Author(s): Anna Wendler, Lena Plötzke, Hannah Tritzschak, Martin J. KühnPublished in Applied Mathematics and Computation by Elsevier BV in 2026, page: 12963610.1016/j.amc.2025.129636
- 3.Author(s): Sarah C. Kramer, Laura Andrea Barrero Guevara, Matthias an der Heiden, Benjamin Wachtler, Matthieu Domenech de CellèsPublished in BMC Public Health by Springer Science and Business Media LLC in 202510.1186/s12889-025-24625-9
- 4.Author(s): Nina Schmid, Julia Bicker, Andreas F. Hofmann, Karina Wallrafen-Sam, David Kerkmann, Andreas Wieser, Martin J. Kühn, Jan HasenauerPublished in Epidemics by Elsevier BV in 2025, page: 10083610.1016/j.epidem.2025.100836
- 5.Author(s): Yessika Adelwin Natalia, Geert Molenberghs, Thomas Neyens, Niel Hens, Christel FaesPublished in PLOS One by Public Library of Science (PLoS) in 2025, page: e032201710.1371/journal.pone.0322017
- 6.Author(s): Hiie Soeorg, Taavi Päll, Aare Abroi, Radko Avi, Olga Sadikova, Mari-Anne Härma, Tuuli Reisberg, Irja Lutsar, Kristi HuikPublished in PLOS One by Public Library of Science (PLoS) in 2025, page: e032771910.1371/journal.pone.0327719
- 7.Author(s): Fatemeh Mirsaeedi, Mohammad Sheikhalishahi, Mehrdad Mohammadi, Amir Pirayesh, Dmitry IvanovPublished in Annals of Operations Research by Springer Science and Business Media LLC in 202510.1007/s10479-025-06893-1
- 8.Author(s): Jessica R. Conrad, Paul W. Fenimore, Kelly R. Moran, Marisa C. EisenbergPublished in Epidemics by Elsevier BV in 2025, page: 10083310.1016/j.epidem.2025.100833
- 9.Author(s): Hussein El Hajj, Fatma Gzara, Samir ElhedhliPublished in INFOR: Information Systems and Operational Research by Informa UK Limited in 2025, page: 1-4010.1080/03155986.2025.2513716
- 10.Author(s): David Kerkmann, Sascha Korf, Khoa Nguyen, Daniel Abele, Alain Schengen, Carlotta Gerstein, Jens Henrik Göbbert, Achim Basermann, Martin J. Kühn, Michael Meyer-HermannPublished in Computers in Biology and Medicine by Elsevier BV in 2025, page: 11026910.1016/j.compbiomed.2025.110269
- 11.Author(s): Yuri Kheifetz, Holger Kirsten, Andreas Schuppert, Markus ScholzPublished in Viruses by MDPI AG in 2025, page: 98110.3390/v17070981
- 12.Author(s): Yan Zhuang, Weihua Li, Yang LiuPublished in Entropy by MDPI AG in 2025, page: 23410.3390/e27030234
- 13.Author(s): Diaoulé Diallo, Jurij Schoenfeld, René Schmieding, Sascha Korf, Martin J. Kühn, Tobias HeckingPublished in Entropy by MDPI AG in 2025, page: 50710.3390/e27050507
- 14.Author(s): Henrik Zunker, Philipp Dönges, Patrick Lenz, Seba Contreras, Martin J. KühnPublished in Chaos, Solitons & Fractals by Elsevier BV in 2025, page: 11678210.1016/j.chaos.2025.116782
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- 21.Author(s): Justin M. Calabrese, Lennart Schüler, Xiaoming Fu, Erik Gawel, Heinrich Zozmann, Jan Bumberger, Martin Quaas, Gerome Wolf, Sabine AttingerPublished in Journal of The Royal Society Interface by The Royal Society in 202410.1098/rsif.2024.0301
- 22.Author(s): Hanqi Zhang, Zhongkui Sun, Yuanyuan LiuPublished in Nonlinear Dynamics by Springer Science and Business Media LLC in 2024, page: 6761-677510.1007/s11071-024-09359-4
- 23.Author(s): Johnson Oluwole Ayodele, Oluwagbemiga Adeyemi, Jane Roli AdebusuyiPublished in Cogent Social Sciences by Informa UK Limited in 202410.1080/23311886.2023.2298095
- 24.Author(s): Reinhard Schlickeiser, Martin KrögerPublished in COVID by MDPI AG in 2023, page: 1781-179610.3390/covid3120123
- 25.Author(s): Jörn KnoblochPublished in Berliner Journal für Soziologie by Springer Science and Business Media LLC in 2023, page: 387-42110.1007/s11609-023-00506-z
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- 27.Author(s): Moritz Zeumer, Jonas Gilg, Pawandeep Kaur Betz, Andreas GerndtPublished in Electronic Imaging by Society for Imaging Science & Technology in 2023, page: 402-1-402-910.2352/ei.2023.35.1.vda-402
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- 29.Author(s): Bin-Guo Wang, Zhi-Cheng Wang, Yan Wu, Yongping Xiong, Jiangqian Zhang, Zhuihui MaPublished in Nonlinear Dynamics by Springer Science and Business Media LLC in 2022, page: 3937-395210.1007/s11071-022-07985-4
- 30.Author(s): Simona Iftimie, Ana F. López-Azcona, Maria José Lozano-Olmo, Anna Hernández-Aguilera, Salvador Sarrà-Moretó, Jorge Joven, Jordi Camps, Antoni CastroPublished in Scientific Reports by Springer Science and Business Media LLC in 202210.1038/s41598-022-22145-9
- 31.Author(s): Benedict J. Lünsmann, Katja Polotzek, Christian Kleber, Richard Gebler, Veronika Bierbaum, Felix Walther, Fabian Baum, Kathleen Juncken, Christoph Forkert, Toni Lange, Hanns-Christoph Held, Andreas Mogwitz, Robin R. Weidemann, Martin Sedlmayr, Nicole Lakowa, Sebastian N. Stehr, Michael Albrecht, Jens Karschau, Jochen SchmittPublished in PLOS ONE by Public Library of Science (PLoS) in 2022, page: e026249110.1371/journal.pone.0262491
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- 37.Author(s): Viola Priesemann, Michael Meyer-Hermann, Iris Pigeot, Anita SchöbelPublished in Bundesgesundheitsblatt - Gesundheitsforschung - Gesundheitsschutz by Springer Science and Business Media LLC in 2021, page: 1058-106610.1007/s00103-021-03390-1
- 38.Author(s): Ayan Paul, Jayanta Kumar Bhattacharjee, Akshay Pal, Sagar ChakrabortyPublished in Scientific Reports by Springer Science and Business Media LLC in 202110.1038/s41598-021-98302-3
- 1.Author(s): Henrik Zunker, René Schmieding, David Kerkmann, Alain Schengen, Sophie Diexer, Rafael Mikolajczyk, Michael Meyer-Hermann, Martin J. KühnPublished by Cold Spring Harbor Laboratory in 202410.1101/2024.03.01.24303602
- 2.Author(s): Eleanor Burch, Saher Aijaz Khan, Jack Stone, Asra Asgharzadeh, Joshua Dawe, Zoe Ward, Ellen Brooks-Pollock, Hannah ChristensenPublished by Cold Spring Harbor Laboratory in 202410.1101/2024.03.24.24304676
- 3.Author(s): Anton Stratmann, Martin Beyß, Johann F. Jadebeck, Katharina NöhPublished by Cold Spring Harbor Laboratory in 202410.1101/2024.04.26.591357
- 4.Author(s): Nina Schmid, Julia Bicker, Andreas F. Hofmann, Karina Wallrafen-Sam, David Kerkmann, Andreas Wieser, Martin J. Kühn, Jan HasenauerPublished by Cold Spring Harbor Laboratory in 202410.1101/2024.11.10.24317057
- 5.Author(s): Reinhard Schlickeiser, Martin KrögerPublished by MDPI AG in 202310.20944/preprints202311.1563.v1
- 6.Author(s): Alicia C. Horn, Holly E. Shoemaker, Lindsay T. KeeganPublished by Cold Spring Harbor Laboratory in 202310.1101/2023.11.13.23298464
- 7.Author(s): Martin J. Kühn, Daniel Abele, Sebastian Binder, Kathrin Rack, Margrit Klitz, Jan Kleinert, Jonas Gilg, Luca Spataro, Wadim Koslow, Martin Siggel, Michael Meyer-Hermann, Achim BasermannPublished by Cold Spring Harbor Laboratory in 202110.1101/2021.04.23.21255995
- 8.Author(s): Wadim Koslow, Martin J. Kühn, Sebastian Binder, Margrit Klitz, Daniel Abele, Achim Basermann, Michael Meyer-HermannPublished by Cold Spring Harbor Laboratory in 202110.1101/2021.07.09.21260257