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37-48 of 89

CellDetection

An open-source Python package, offering advanced AI methods for the identification and segmentation of biomedical objects, such as cells, in image data. Includes trained models that work out-of-the-box for a wide range of use cases.

cell counting
cell detection
cell segmentation
+ 9

Python
Dockerfile

JuPedSim

JuPedSim is a framework designed to support students and researchers in investigating pedestrian dynamics and conducting research related to the development and validation of new models or model features. It enables the analysis of experiments and facilitates the proper visualization of results.

Information
Modeling
open source
+ 3

Python
C++
Jupyter Notebook
+ 4

t8code

t8code (spoken as "tetcode") is a C/C++ library to manage parallel adaptive meshes with various element types. t8code uses a collection (a forest) of multiple connected adaptive space-trees in parallel and scales to at least one million MPI ranks and over 1 trillion mesh elements.

data managment
Data Visualization
exascale
+ 3

C++
C
Makefile
+ 7

Global Benchmark Database (GBD)

GBD is a comprehensive suite of tools for provisioning and sustainably maintaining benchmark instances and their metadata for empirical research on hard algorithmic problem classes.

Data analysis
FAIR Software
Information
+ 4

Python
JavaScript
HTML
+ 2

PtyLab.m/py/jl

A cross-platform, open-source inverse modeling toolbox for conventional and Fourier ptychography

computational physics
Data analysis
Data Visualization
+ 10

Jupyter Notebook
Python

Prospective Monitoring and Management - App (PIA)

PIA is a free open-source eResearch System for monitoring of incident events and provides a digital infrastructure for conducting population-based studies in any research field - at a study centre or at home. PIA focuses on repeated surveys. #DigitalEpidemiology #LongitudinalDataCollection #FOSS

Data Collection
Digital Infrastructure
epidemiology
+ 5

TypeScript
HTML
JavaScript
+ 9

pkgndep

A new metric named 'dependency heaviness' is proposed that measures the number of additional dependency packages that a parent package brings to its child package and are unique to the dependency packages imported by all other parents.

Data analysis
Data Visualization
FAIR Data
+ 3

R
HTML
JavaScript
+ 1

Forgejo-aneksajo

A data management and collaboration platform based on Forgejo and extended with git-annex support. Essentially a git forge for data projects. It interoperates well with DataLad and provides a nice collaborative web hosting for datasets containing issue trackers, pull requests, CI, and more.

collaboration
data management
Earth & Environment
+ 8

Ideal-Equilibrium-Oxygen-Membrane-Reactor

The Python script OMR_model.py allows to simulate oxygen membrane reactors with continuous gas flow rates.

Energy
Membrane reactor
MTET
+ 3

Python

HIPSTA

The HIPpocampal Shape and Thickness Analysis Toolbox (HIPSTA) present a geometry-based method for the analysis of local hippocampal thickness and curvature and constructs an intrinsic coordinate system (unrolling/flattening) for statistical analysis across multiple participants.

MRI
Neuroimaging
open source
+ 1

Python
Dockerfile

SimCATS

Simulation of CSDs for Automated Tuning Solutions (SimCATS) is a python framework for simulating charge stability diagrams (CSDs) typically measured during the tuning process of qubits.

open source
python
Quantum Dots
+ 1

Jupyter Notebook
Python

LinMOG

LinMOG is a collection of tools for the generation of linear models for univariate and multivariate functions. Furthermore, the linear model can be automatically transformed into a MILP optimization formulation.

Energy
ESD
ESD - Topic 2
+ 3

Python