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spacemake
Processing and analysis of large-scale spatial transcriptomics data
- Pipeline
- snakemake
- Spatial transcriptomics
- Python
- Jupyter Notebook
- Shell
- + 3
4
31
microGWAS
microGWAS is a snakemake-powered pipeline to carry out an end-to-end microbial GWAS analysis. Starting from genome assemblies and a phenotype file, microGWAS will run a number of associations using pyseer, annotate the associations results, and generating a number of functional enrichment tests.
- GWAS
- mGWAS
- Pipeline
- + 2
- Python
- Shell
- R
5
3