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Cover image for QUAST

QUAST

QUAST is a state-of-the-art tool for (meta)genome assembly evaluation, computing over 50 quality metrics and presenting results in plain text, static plots, and interactive HTML reports.

  • Data Visualization
  • FAIR Software
  • Genome assembly
  • + 4
  • AMPL
  • C++
  • Python
  • + 12
4
9555
Cover image for CP2K

CP2K

CP2K is a quantum chemistry and solid state physics software package running on graphics processing units and thousands of processing units. It is open-source and allows simulations, spectroscopy, vibrational analysis and energy minimization on a vast variety of theory levels.

  • electronic structure
  • GPU
  • High performance computing
  • + 5
  • Fortran
  • C
  • Python
  • + 13
8
2228
Cover image for anvi'o

anvi'o

Anvi'o is an open-source software platform for microbial 'omics research enabling analysis and visualization of 'omics data. In development since 2014, it is currently being maintained by the Ecosystem Data Science group at the Helmholtz Institute for Functional Marine Biodiversity.

  • Data analysis
  • Data Visualization
  • Omics
  • + 1
  • Python
  • JavaScript
  • HTML
  • + 5
0
2050
Cover image for REMix

REMix

REMix is a powerful software for energy systems optimization. It can be used for the planning and techno-economical assessment of future multi-energy systems of any spatial, temporal and technological scope. REMix offers a wide range of methods and features that can be flexibly selected by the user.

  • Energy
  • Energy planning
  • ESD
  • + 5
  • GAMS
  • Python
  • Dockerfile
18
1609
Cover image for KeY

KeY

KeY is a deductive verification system for Java programs

  • Deductive Verification
  • First-Order Logic
  • Formal Verification
  • + 3
  • Java
  • HTML
  • ANTLR
  • + 14
30
1009
Cover image for ETHOS.FINE - Framework for Integrated Energy System Assessment

ETHOS.FINE - Framework for Integrated Energy System Assessment

ETHOS.FINE provides a framework for modeling, optimizing and assessing energy systems. Systems with multiple regions, commodities and time steps can be modeled. Target of the optimization is the minimization of the total annual cost while considering technical and environmental constraints.

  • Energy
  • Energy planning
  • ESD
  • + 6
  • Python
  • Dockerfile
2
813
Cover image for NEST

NEST

NEST is a simulator for spiking neuronal networks. A well tested and efficient tool, NEST works on your laptop and also on the world’s largest supercomputers to study behaviour of large networks of neurons.

  • Computational neuroscience
  • exascale
  • Modeling
  • + 3
  • C++
  • Python
  • CMake
  • + 3
119
542
Cover image for JPlag

JPlag

JPlag is one of the most popular source code plagiarism detection systems worldwide.

  • Automated Obfuscation Attack
  • Collusion Detection
  • Data analysis
  • + 9
  • Java
  • ANTLR
  • Rust
  • + 15
7
535
Cover image for PIConGPU

PIConGPU

PIConGPU is a relativistic Particle-in-Cell code running on graphic processing units as well as regular multi-core processors. It is Open Source und is freely available for download. It can be used to study plasmas with relativistic dynamics, solving the Maxwell-Vlasov system of equations.

  • C++
  • CPU
  • GPU
  • + 9
  • C++
  • Python
  • Shell
  • + 5
11
504
Cover image for PeTrack

PeTrack

PeTrack (Pedestrian Tracking) automatically extracts accurate pedestrian trajectories from video recordings (calibration, recognition, tracking). Individual codes enable personalized trajectories with static information of each participant. With a stereo camera also markerless tracking is possible.

  • Annotation
  • Calibration
  • Computer Vision
  • + 17
  • C++
  • Python
  • CMake
  • + 2
16
473
Cover image for PDAF

PDAF

PDAF - the Parallel Data Assimilation Framework is a software framework for interdisciplinary data assimilation. PDAF provides support for ensemble modeling and fully implemented data assimilation methods to merge models and observational data which let models learn from observations.

  • Atmospheric science
  • data assimilation
  • Earth & Environment
  • + 9
  • Fortran
  • Shell
  • Makefile
  • + 4
5
363
Cover image for CrystFEL

CrystFEL

CrystFEL is a suite of programs to process data from "serial crystallography" experiments.

  • crystallography
  • Matter
  • structural biology
  • + 2
  • C
  • Julia
  • Python
  • + 2
25
341