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anvi'o
anvi'o is an open-source software platform for microbial 'omics research enabling analysis and visualization of 'omics data. In development since 2014, it is currently being maintained by the Ecosystem Data Science group at the Helmholtz Institute for Functional Marine Biodiversity.
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Description
Anvi'o supports integrated and interactive analysis of sequence-based 'omics data, from pangenomics and metagenomics to metabolic reconstruction and tRNA sequence analysis. It includes over 150 modular programs that can be mixed and matched into analysis workflows for specific research questions, a web browser-based interface for interactive exploration of datasets, and a friendly user community.
For more information and extensive documentation/tutorials, please see the anvi'o website.
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Hel
Helmholtz Institute for Functional Marine Biodiversity
Reference papers
- 1.Author(s): A. Murat Eren, Evan Kiefl, Alon Shaiber, Iva Veseli, Samuel E. Miller, Matthew S. Schechter, Isaac Fink, Jessica N. Pan, Mahmoud Yousef, Emily C. Fogarty, Florian Trigodet, Andrea R. Watson, Özcan C. Esen, Ryan M. Moore, Quentin Clayssen, Michael D. Lee, Veronika Kivenson, Elaina D. Graham, Bryan D. Merrill, Antti Karkman, Daniel Blankenberg, John M. Eppley, Andreas Sjödin, Jarrod J. Scott, Xabier Vázquez-Campos, Luke J. McKay, Elizabeth A. McDaniel, Sarah L. R. Stevens, Rika E. Anderson, Jessika Fuessel, Antonio Fernandez-Guerra, Lois Maignien, Tom O. Delmont, Amy D. WillisPublished in Nature Microbiology by Springer Science and Business Media LLC in 2020, page: 3-610.1038/s41564-020-00834-3
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Mentions
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Contributors
AE
Helmholtz Institute for Functional Marine Biodiversity
IV
Iva Veseli
Helmholtz Institute for Functional Marine Biodiversity
SM
Samuel Miller
Marine Biological Laboratory
FT
Florian Trigodet
Helmholtz Institute for Functional Marine Biodiversity
MS
Matthew Schechter
University of Chicago
TD
Tom O. Delmont
French National Centre for Scientific Research
Helmholtz Program-oriented Funding IV
Research Field
Research Program
PoF Topic