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HIFIS Software Spotlights

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52
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1-12 of 12
Cover image for CADET

CADET

CADET is a fast and accurate solver for a comprehensive model family of biotechnological processes. Applications include chromatography, filtration, crystallization, and fermentation. The open source software implements state-of-the-art mathematical algorithms and scientific computing techniques.

  • adsorption
  • chromatography
  • compartment modelling
  • + 4
  • C++
  • CMake
  • C
  • + 1
6
245
Cover image for CryoGrid

CryoGrid

The CryoGrid Model Suite provides a set of numerical tools for simulating the thermal soil regime and the ice-water balance for permafrost and glaciers. Depending on the application needs different model tools are offered, characterized by different levels complexity and modularity.

  • Climate
  • Earth & Environment
  • Modeling
  • + 1
  • MATLAB
  • HTML
  • Mercury
  • + 2
8
257
Cover image for ELECTRODE

ELECTRODE

ELECTRODE extends the atomistic simulation tool LAMMPS to model different types of electrochemical situations. Simulations are performed at constant potential or constant charge using different approaches to control potential or charge at the electrodes.

  • Constant Potential Method
  • Electrochemistry
  • Molecular Dynamics
  • C++
  • Tcl
  • Python
  • + 23
4
2
Cover image for FishInspector

FishInspector

The software FishInspector provides automatic feature detections in images of zebrafish embryos (body size, eye size, pigmentation). It is Matlab-based and provided as a Windows executable (no matlab installation needed).

  • Earth & Environment
  • image feature detection
  • pattern recognition
  • + 1
  • MATLAB
  • HTML
0
0
Cover image for InteractiveVis

InteractiveVis

The InteractiveVis software framework provides a blueprint for evaluating 3D datasets with convolutional neural networks (CNNs), and for deriving and visualizing CNN relevance maps. This tool was developed and tested for disease detection in MRI scans. We plan to extend it to other domains.

  • Data Visualization
  • MRI
  • open source
  • + 1
  • Jupyter Notebook
  • HTML
  • MATLAB
  • + 5
1
0
Cover image for JEMRIS

JEMRIS

JEMRIS is a versatile, open-source, multi-purpose MRI simulator. It is well-suited for research and education.

  • MRI
  • Simulation
  • C++
  • Python
  • MATLAB
  • + 4
2
90
Cover image for matRad

matRad

matRad is a dose calculation and inverse treatment planning toolkit for radiotherapy research and education written in Matlab.

  • Health
  • Medical Physics
  • Particle Therapy
  • + 2
  • MATLAB
  • C++
  • Shell
1
149
Cover image for PDAF

PDAF

PDAF - the Parallel Data Assimilation Framework is a software framework for interdisciplinary data assimilation. PDAF provides support for ensemble modeling and fully implemented data assimilation methods to merge models and observational data.

  • data assimilation
  • Ensemble Kalman Filter
  • uncertainty quantification
  • + 1
  • Fortran
  • Shell
  • Makefile
  • + 4
3
230
Cover image for Potsdam Open-source Radio interferometry Tool (PORT)

Potsdam Open-source Radio interferometry Tool (PORT)

PORT is a software package dedicated to the analysis of modern and historical Very Long Baseline Interferometry (VLBI) observations. It is utilized to perform the GFZ VLBI Analysis Center responsibilities, as well as state-of-the-art research in space geodesy, geophysics, and astrometry.

  • Astrometry
  • Earth orientation parameters
  • Reference frames
  • + 1
  • Python
  • MATLAB
  • Fortran
  • + 2
0
0
Cover image for TiXI

TiXI

TiXI is a fast and simple XML interface library and could be used from applications written in C, C++, Fortran, JAVA and Python.

  • xml
  • C++
  • C
  • Python
  • + 7
3
0
Cover image for TomoBEAR

TomoBEAR

TomoBEAR is an open-source configurable and customizable modular pipeline for streamlined and parallelized processing of large-scale cryo-electron tomography data for subtomogram averaging.

  • Alignment
  • automated reasoning
  • cluster
  • + 16
  • MATLAB
  • M
  • Python
  • + 1
4
4
Cover image for TSMP

TSMP

The Terrestrial Systems Modelling Platform (TSMP) is an open source framework implementing a scale-consistent, highly modular, massively parallel regional Earth system model. It represents transport and feedback processes of mass, energy and momentum across geo-ecosystem compartments and scales.

  • Earth & Environment
  • Fortran
  • Shell
  • C
  • + 10
6
0