All software

circlize

Circular layout is an efficient way for the visualization of huge amounts of information. Here this package provides an implementation of circular layout generation in R as well as an enhancement of available software.

ComplexHeatmap

Complex heatmaps are efficient in visualizing associations between different sources of data sets and revealing potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

Earth System Model Evaluation Tool (ESMValTool)

ESMValCore

Ginkgo

Ginkgo is a high-performance math library for the solution of sparse linear systems on GPUs (AMD, Intel, NVIDIA). Ginkgo is implemented using modern C++ and provides preconditioned Krylov solvers, multigrid, sparse direct solvers, mixed precision, and batched functionality.

Habitat Sampler

Habitat Sampler (HaSa, Community Version), an innovative tool that autonomously generates representative reference samples for predictive modelling of surface class probabilities.

hCoCena - horizontal integration and analysis of transcriptomics datasets

hCoCena is an R-package that allows you to comprehensively and easily analyse your transcriptomics data. It also provides the option to integrate several datasets using a network-based integration approach and analyse them jointly. Tutorials and a Docker image exist to help you get to know the tool.

InteractiveVis

The InteractiveVis software framework provides a blueprint for evaluating 3D datasets with convolutional neural networks (CNNs), and for deriving and visualizing CNN relevance maps. This tool was developed and tested for disease detection in MRI scans. We plan to extend it to other domains.

JPlag

JPlag is one of the most used software plagiarism detectors in universities around the world.

methylKit

methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing.

mHM

The mesoscale Hydrologic Model (mHM) is a well established hydrological model used by the scientific community. It is under active development with dozens of contributors and has an open community always interested in discussions.

PiGx

PiGx is a collection of genomics pipelines. All pipelines are easily configured with a simple sample sheet and a descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.