All software
MassBank
MassBank is an open source mass spectral library for the identification of small chemical molecules of metabolomics, exposomics and environmental relevance.
- database
- Earth & Environment
- mass spectrometry
mcodac
Calculation of pristine and damaged composite structures
- Fortran
- python
- CMake
- Python
mobile Drilling Information System (mDIS)
mDIS is a database management application for capturing and curating meta data on geological samples, drilling progress, and related datasets such as images or geophysical well logs. It is easily adaptable and ensures that all data is compiled and quality controlled in one place.
- data management
- drilling
- Earth & Environment
- + 1
- PHP
- Vue
- JavaScript
- + 2
me-compute
me-compute: a Python software to download events and data from FDSN web services and compute their energy magnitude (Me)
- energy magnitude
- FDSN
- seismic data
- + 1
- Python
- HTML
MemBrain v2
MemBrain v2 aims to facilitate the analysis of membranes in cryo-electron tomography data. It consists of the components membrain-seg for membrane segmentation, membrain-pick for membrane protein localization, and membrain-stats for the extraction of membrane-based metrics.
- Python
MemRBC
MemRBC is an R package for spectral modeling of red blood cell shapes in R. It is the result of open science research, demonstrating the idea of hi-level apps with metadata creation in a lightweight obejct oriented approach.
- cell shape
- Helfrich
- R
- + 5
- R
- C++
- C
MERCY
The marine mercury cycling model MERCY v2.0 is a chemistry transport and bio-accumulation model for mercury (Hg). It implements all known processes for marine (pelagic and benthic) Hg cycling into a biogeochemical 3D ocean-ecosystem model. https://gmd.copernicus.org/preprints/gmd-2021-427/
- Bioaccumulation
- Chemistry Transport Modeling
- Earth & Environment
- + 6
Merkle-DAG-Matlab
Merkle-Directed Acyclic Graph (DAG) in MATLAB
- Cryptographic-hash-functions
- Graph-algorithms-and-data-sturcture
- matlab
- + 1
- MATLAB
MetaStore
MetaStore is a research data repository software for storing metadata documents and schemas. Quality and consistency are ensured by associating and validating each document against a schema. It supports JSON and XML.
- data managment
- FAIR Data
- metadata
- + 1
- Java
- JavaScript
- HTML
- + 3
methylKit
methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing.
- R
- C++
- TeX
Metrics Reloaded
The mission of Metrics Reloaded toolkit is to guide researchers in the selection of appropriate performance metrics for biomedical image analysis problems and to provide a comprehensive online resource for metric-related information and pitfalls.
- Algorithm Validation
- Problem-Aware Metric Selection
- Problem Fingerprint
mHM
The mesoscale Hydrologic Model (mHM) is a well established hydrological model used by the scientific community. It is under active development with dozens of contributors and has an open community always interested in discussions.
- Earth & Environment
- mesoscale hydrologic model
- mHM
- + 2
- AGS Script
- Fortran Free Form
- Python
- + 2