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25-36 of 36

2x2, 3x3 and nxn Space-Filling Curves

Implementation of all possible forms of 2x2 and 3x3 space-filling curves, and nxn curves expanded from any specific level-1 units. It also implements the H-curve and the three-dimensional Hilbert curve.

Data analysis
Data Visualization
open source

CIMPredict

CIMPredict delivers an alternative to the FRAX fracture risk calculator for osteoporosis patients based on a new Calcium isotope marker in blood.

Blue Health Tech
Data analysis
Health
+ 2

Python
R

Ginkgo

Ginkgo is a high-performance math library for the solution of sparse linear systems on GPUs (AMD, Intel, NVIDIA). Ginkgo is implemented using modern C++ and provides preconditioned Krylov solvers, multigrid, sparse direct solvers, mixed precision, and batched functionality.

GPU
High performance computing
Large linear equation system
+ 4

C++
CMake
Cuda
+ 4

Habitat Sampler

Habitat Sampler (HaSa, Community Version), an innovative tool that autonomously generates representative reference samples for predictive modelling of surface class probabilities.

autonomous sampling
Earth & Environment
image classification
+ 1

HTML
R
Shell

InteractiveVis

The InteractiveVis software framework provides a blueprint for evaluating 3D datasets with convolutional neural networks (CNNs), and for deriving and visualizing CNN relevance maps. This tool was developed and tested for disease detection in MRI scans. We plan to extend it to other domains.

Data Visualization
MRI
open source
+ 1

Jupyter Notebook
HTML
MATLAB
+ 5

KaRRi - Karlsruhe Rapid Ridesharing

KaRRi is a state-of-the-art dispatcher for the dynamic taxi sharing problem with meeting points. KaRRi utilizes highly engineered many-to-many shortest path queries to compute optimal assignments of riders to vehicles and according meeting points within milliseconds.

algorithm engineering
algorithms
Future Mobility
+ 11

C++
CMake
Shell
+ 3

methylKit

methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing.

mHM

The mesoscale Hydrologic Model (mHM) is a well established hydrological model used by the scientific community. It is under active development with dozens of contributors and has an open community always interested in discussions.

Earth & Environment
mesoscale hydrologic model
mHM
+ 2

AGS Script
Fortran Free Form
Python
+ 2

PiGx

PiGx is a collection of genomics pipelines. All pipelines are easily configured with a simple sample sheet and a descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.

HTML
Python
R
+ 7

ReStore

ReStore for MPI programs enables scalable in-memory recovery of data after process failures via an appropriate data distribution and replication. It supports shrinking and replacing recovery-schemes and is substantially faster than parallel file system based approaches.

Distributed Memory Algorithms
Fault-Tolerance
High performance computing

C++
R
CMake
+ 2

scPower

scPower is a statistical framework for design and power analysis of multi-sample single cell transcriptomics experiments. It enables users to identify the optimal experimental parameters for cell type specific inter-individual DE and eQTL analysis using single cell RNA-seq data given a fixed budget.

Experimental design
Health
scRNA-seq
+ 1

R
HTML
CSS

VoltRon

VoltRon is a spatial omic analysis toolbox for multi-omics integration using spatial image registration. VoltRon is also capable of analyzing multiple types of spatially-aware data modalities.

Genomics
spatial omics

R
C++
Dockerfile
+ 2