All software
wps-command-line-tool-repository
A wrapper framework around the WPS 4.0 server by 52° North to allow easy integration of command line scripts into WPS services.
- Earth & Environment
- Remote Procedure Calls
- Web Processing Service
- Java
- Scheme
- Python
- + 3
base-repo
Base-repo is a generic, domain-agnostic research data repository suitable to store and manage all kinds of research data. Its content is organized as DataResources, which consist of descriptive DataCite-compliant Metadata and one or more data elements, either stored as files or linked by reference.
- Datacite
- data managment
- FAIR Data
- + 1
- Java
- Shell
- Dockerfile
Calopy
A web-based, open-source platform for the analysis of indirect calorimetry data, measuring energy metabolism in animals and humans.
- Data analysis
- Data Visualization
- Health
- + 2
- Python
- Dockerfile
- CSS
case-e
case-e is an open-source electronic case report form (eCRF) system for designing clinical studies and collecting structured research data. It supports configurable forms, validation, role-based access, audit trails, versioning, and portable exports for transparent, FAIR-oriented research workflows.
- BIDS
- Biomedical Ontologies
- Clinical Research
- + 9
- Vue
- Python
- JavaScript
- + 4
Computer Vision Experimentation Frameworks - Generalized-YOLOv5
- biomedical image analysis
- Deep Learning
- natural image analysis
- + 4
- Python
- Shell
- Dockerfile
DataFlow
A comprehensive framework for automated data processing and manual postprocessing, including quality control and flagging. Modular and extensible design allows to create customizable pipelines and monitor their performance throughout the data lifecycle.
- data managment
- Data Visualization
- Pipeline
- + 2
- TSX
- Python
- TypeScript
- + 2
EcoToxFred
EcoToxFred (ETF) is a digital domain expert that enables simple, natural-language access to complex, integrated ecotoxicological data. It combines knowledge graphs, large language models, and agent-based workflows to support intuitive exploration and analysis of environmental risk information.
- Conversational AI
- Environmental Toxicology
- knowledge graph
- + 2
- Python
- Cypher
- Dockerfile
flexynesis
A deep-learning based multi-omics sequencing data integration suite
- Python
- Scheme
- Dockerfile
FlowStrider
FlowStrider automates data flow-based threat modeling
- threat modeling
- Python
- Dockerfile
FSQC
This package provides quality assurance / quality control scripts for FastSurfer- or FreeSurfer-processed structural MRI data.
- Data analysis
- MRI
- Neuroimaging
- + 2
- Python
- Dockerfile
ETHOS.HiSim - Household Infrastructure and Building Simulator
ETHOS.HiSim is a Python package for simulation and analysis of household scenarios and building systems using modern components as alternative to fossil fuel based ones. This package integrates load profiles generation of electricity consumption, heating demand, electricity generation.
- ESD
- ESD - Topic 1
- Modeling
- + 2
- Python
- Jupyter Notebook
- Shell
- + 3
InteractiveVis
The InteractiveVis software framework provides a blueprint for evaluating 3D datasets with convolutional neural networks (CNNs), and for deriving and visualizing CNN relevance maps. This tool was developed and tested for disease detection in MRI scans. We plan to extend it to other domains.
- Data Visualization
- MRI
- open source
- + 1
- Jupyter Notebook
- HTML
- MATLAB
- + 5