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61-72 of 81

KinFit

KinFit can be used for kinematic fitting in particle and hadron physics experiments. The iterative procedure is based on the Langrange multiplier technique. Constraints such as mass, vertex and momentum conservation are included.

C++
Data analysis
open source

C++
C
CMake

methylKit

methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing.

Millepede II

Millepede II has been developed to solve the linear least squares problem with a simultaneous fit of all global and local parameters, irrespectively of the number of local parameters.

Alignment
Large linear equation system
Matter
+ 1

Fortran Free Form
C
Python
+ 2

Minion

Minion is an optimization library designed for solving complex optimization problems where gradients are unavailable or unreliable. It implements state-of-the-art evolutionary algorithms which are often missing in standard optimization libraries.

C++
optimization
python

C++
MATLAB
Python
+ 4

MooViE

MooViE is an easy-to-use tool to display multidimensional data with input-output semantics from all research domains. It supports researcher in studying the mapping of several inputs to several outputs in large multivariate data sets.

C++
Data Visualization

C++
CMake
Dockerfile
+ 2

Nexus - Nuclear Elastic X-ray scattering Universal Software

The Nuclear Elastic X-ray scattering Universal Software (Nexus) is a Python package for simulating and fitting of Mossbauer spectra, nuclear resonant scattering (NRS) data, pure electronic X-ray reflectivities (XRR), nuclear X-ray reflectivities, and polarization dependent electronic scattering.

Mossbauer
Mossbauer spectroscopy
Nuclear resonant scattering
+ 1

C++
SWIG
Python
+ 2

oidc-agent

oidc-agent is an OpenID Connect tool suite designed to simplify authentication processes for command-line applications and workflows that require access to resources protected by OIDC. It provides a secure, but user-friendly way to manage tokens on the command-line.

AAI
command-line
OIDC
+ 2

C
C++
Makefile
+ 4

openFuelCell2

openFuelCell2 is a computational fluid dynamics (CFD) toolbox for simulating electrochemical devices such as fuel cells and electrolysis. The solver is based on the open-source library, OpenFOAM®.

Electrolyzer
Energy
Fuel cells
+ 1

C
C++
Python
+ 2

openPMD-api

openPMD is an open meta-data schema that provides meaning and self-description for datasets in science and engineering. This library provides a reference API for openPMD data handling, supporting established I/O backends such as HDF5, ADIOS2, JSON and TOML from serial to MPI-parallel workflows.

ADIOS
data
file-format
+ 8

C++
Python
CMake
+ 4

ProFASi

PROFASI (PROtein Folding and Aggregation SImulator) is a C++ package for HPC Monte Carlo simulations of protein folding and aggregation. It provides an all atom, implicit solvent force field, and a set of tools to perform Monte Carlo simulations. A plugin mechanism allows for user extensions.

Monte Carlo
Peptide Aggregation
Protein folding
+ 2

C++
CMake
Python
+ 1

RAYX

Optical Simulation Software for Synchrotron Radiation

C++
open source
python
+ 2

C++
Python
CSS
+ 7

ReStore

ReStore for MPI programs enables scalable in-memory recovery of data after process failures via an appropriate data distribution and replication. It supports shrinking and replacing recovery-schemes and is substantially faster than parallel file system based approaches.

Distributed Memory Algorithms
Fault-Tolerance
High performance computing

C++
R
CMake
+ 2