All software
PiGx
PiGx is a collection of genomics pipelines. All pipelines are easily configured with a simple sample sheet and a descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.
- HTML
- Python
- R
- + 7
PP
Pixel-Patrol
- Data exploration
- Prevalidation
- QC
- + 1
- Jupyter Notebook
- Python
- JavaScript
- + 3
QCI Connect Mini Server
A mini server for local development with the DLR QCI Connect quantum computing platform.
- Mini Server
- Quantum Computing
- Python
- JavaScript
- CSS
- + 2
Qimchi
Qimchi provides interactive visualization and analysis of quantum measurement data, allowing researchers to browse, plot, and annotate multidimensional datasets both during and after acquisition.
- Data Visualization
- FAIR Data
- python
- + 1
- Python
- TSX
- TypeScript
- + 2
react-search-component
All-in-one component for rendering an elastic search UI for searching anything. Built-in support for visualizing related items in a graph and resolving unique identifiers. Initially built for searching Fair-DOs.
- component
- data
- elastic
- + 14
- TypeScript
- CSS
- MDX
- + 1
SampleDB
SampleDB is a web-based electronic lab notebook with a focus on sample and measurement metadata. With SampleDB, you can track each step in the sample lifecycle and its schema system allows you to define exactly what metadata should be stored for each process, from a simple check box to time series.
- Electronic Lab Notebook
- metadata
- Research Data Management
- Python
- HTML
- JavaScript
- + 3
Schema Studio
Schema Studio is an open-source visual platform for creating, validating, previewing, versioning, and publishing JSON Schema-based metadata models for FAIR research data.
- controlled vocabularies
- dynamic forms
- FAIR Data
- + 18
- TSX
- TypeScript
- Python
- + 2
scPower
scPower is a statistical framework for design and power analysis of multi-sample single cell transcriptomics experiments. It enables users to identify the optimal experimental parameters for cell type specific inter-individual DE and eQTL analysis using single cell RNA-seq data given a fixed budget.
- Experimental design
- Health
- scRNA-seq
- + 1
- R
- HTML
- CSS
spirit
Spirit is a platform-independent framework for atomistic spin-dynamics. It combines the traditional cluster workflow through a C-API with python bindings with modern visualisation capabilities in order to maximise scientists' productivity.
- Atomistic Spin Dynamics
- C++
- CUDA
- + 5
- C++
- Python
- CMake
- + 9
supervillain
supervillain does Markov-Chain Monte Carlo for modified Villain constructions of quantum field theory.
- computational physics
- Monte Carlo simulation
- Physics
- + 2
- Python
- TeX
- Makefile
- + 2
Watts
WaTTS allows using any legacy service with federated identities, such as eduGain or google.
- AAI
- OIDC
- Token Translation
- Erlang
- HTML
- Elm
- + 6