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13-24 of 33

JEMRIS

JEMRIS is a versatile, open-source, multi-purpose MRI simulator. It is well-suited for research and education.

MRI
Simulation

C++
Python
MATLAB
+ 4

JuPedSim

JuPedSim is a framework designed to support students and researchers in investigating pedestrian dynamics and conducting research related to the development and validation of new models or model features. It enables the analysis of experiments and facilitates the proper visualization of results.

Information
Modeling
open source
+ 3

Python
C++
Jupyter Notebook
+ 4

Mallob

Decentralized job scheduling platform for HPC and cloud environments, featuring an award-winning distributed engine for automated reasoning (SAT solving)

automated reasoning
High performance computing
job scheduling
+ 1

C++
Shell
Python
+ 5

mHM

The mesoscale Hydrologic Model (mHM) is a well established hydrological model used by the scientific community. It is under active development with dozens of contributors and has an open community always interested in discussions.

Earth & Environment
mesoscale hydrologic model
mHM
+ 2

AGS Script
Fortran Free Form
Python
+ 2

Medical Imaging Interaction Toolkit (MITK)

A free and open-source software for the development of interactive medical image processing applications. MITK provides a powerful and free application called the MITK Workbench, which allows users to view, process, and segment medical images.

Artificial Intelligence
C++
Data Visualization
+ 7

C++
CMake
C
+ 8

MooViE

MooViE is an easy-to-use tool to display multidimensional data with input-output semantics from all research domains. It supports researcher in studying the mapping of several inputs to several outputs in large multivariate data sets.

C++
Data Visualization

C++
CMake
Dockerfile
+ 2

NEST

NEST is a simulator for spiking neuronal networks. A well tested and efficient tool, NEST works on your laptop and also on the world’s largest supercomputers to study behaviour of large networks of neurons.

Computational neuroscience
exascale
Modeling
+ 3

C++
Python
CMake
+ 3

119

542

openCARP

openCARP is a multiscale cardiac electrophysiology simulator for in silico experiments ranging from single heart cells and cardiac tissue to organ models up to the body surface ECG.

computational cardiology
electrophysiology
Health
+ 2

C++
Python
C
+ 2

120

pasta::bit_vector

This header-only library contains a highly tuned (uncompressed) bit vector implementation with multiple space efficient rank and select support data structures. Our fastest rank and select support has a space overhead of only ~3.51% and makes use of data level parallelism via SIMD instructions.

C++
CMake

PDAF

PDAF - the Parallel Data Assimilation Framework is a software framework for interdisciplinary data assimilation. PDAF provides support for ensemble modeling and fully implemented data assimilation methods to merge models and observational data.

Atmospheric science
data assimilation
Earth & Environment
+ 9

Fortran
Shell
Makefile
+ 4

230

PeTrack

PeTrack (Pedestrian Tracking) automatically extracts accurate pedestrian trajectories from video recordings (calibration, recognition, tracking). Individual codes enable personalized trajectories with static information of each participant. With a stereo camera also markerless tracking is possible.

Calibration
Correction
Crowd
+ 12

C++
Python
CMake
+ 2

396

PIConGPU

PIConGPU is a relativistic Particle-in-Cell code running on graphic processing units as well as regular multi-core processors. It is Open Source und is freely available for download. It can be used to study plasmas with relativistic dynamics, solving the Maxwell-Vlasov system of equations.

CPU
GPU
Matter
+ 2

C++
Python
Shell
+ 5