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13-17 of 17
Cover image for PiGx

PiGx

PiGx is a collection of genomics pipelines. All pipelines are easily configured with a simple sample sheet and a descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.

  • HTML
  • Python
  • R
  • + 7
5
0
Cover image for Rankings Reloaded

Rankings Reloaded

Rankings Reloaded is an open-source toolkit for robust and accurate benchmark visualization and ranking. It is an out-of-the-box and open-source framework for analyzing and visualizing algorithm results in an accurate way. It uses challengeR and brings advantages of it with user-friendly interface.

  • Data analysis
  • Data Visualization
  • Information
  • + 1
  • R
3
1
Cover image for scanpy

scanpy

Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.

  • bioinformatics
  • Data analysis
  • python
  • Python
  • R
3
1
Cover image for SERGHEI

SERGHEI

The Simulation EnviRonment for Geomorphology, Hydrodynamics and Ecohydrology in Integrated form (SERGHEI) is a multi-dimensional, multi-domain, and multi-physics model framework for environmental and landscape simulation, intended to simulate water flow and transport across landscape scales.

  • Earth & Environment
  • GPU
  • High performance computing
  • + 4
  • C++
  • PostScript
  • Shell
  • + 2
3
0
Cover image for UltraMassExplorer (UME)

UltraMassExplorer (UME)

Natural organic matter is the most complex chemical mixture on our planet. UME is an open access, browser-based tool that allows efficient, interactive, transparent, and reproducible exploration and evaluation of ultrahigh resolution mass spectra of complex organic matter.

  • analytical chemistry
  • Carbon cycle
  • Data analysis
  • + 7
  • R
3
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