All software

QUAST

QUAST is a state-of-the-art tool for (meta)genome assembly evaluation, computing over 50 quality metrics and presenting results in plain text, static plots, and interactive HTML reports.

KeY

KeY is a deductive verification system for Java programs

CPlantBox

CPlantBox is a functional-structural plant-soil modelling framework. It simulated the 3D architecture of a plant, coupled carbon and water flow within the plant, water flow and solute transport in a 3D dynamic soil, as well as water and nutrient uptake, and rhizodeposition.

Earth System Model Evaluation Tool (ESMValTool)

matRad

matRad is a dose calculation and inverse treatment planning toolkit for radiotherapy research and education written in Matlab.

ESMValCore

BlenderProc

A procedural Blender pipeline for photorealistic training image generation

kramersmoyal

The Python package `kramersmoyal` provides functions to analyze stochastic drift-diffusion and discontinuous stochastic processes in observational and experimental data.

mmpxrt

Raytracing code for x-ray spectrometers with (not only) mossaic crystals Helps with design and analysis of x-ray spectrometers. Useful tool for (rather) experienced physicist.

Reflectorch

Reflectorch is a Python package for the analysis of X-ray and neutron reflectivity data using Pytorch-based neural networks. It provides fast simulation of reflectometry curves by GPU, parameterization via YAML configuration files, and prior-aware training.

UQTestFuns

A Python3 library of uncertainty quantification (UQ) test functions

PeriHub

PeriHub is a platform that provides a numerical implementation of the peridynamic theory. It is an extension of the open source Peridigm software. Peridynamics is a non-local theory that overcomes discontinuity problems of the classical theory of continuum mechanics.