Helmholtz-Zentrum Dresden-Rossendorf
Materials Learning Algorithms
MALA (Materials Learning Algorithms) is a data-driven framework to accelerate electronic structure calculations based on machine learning. Its purpose is to construct neural-network surrogate models for bypassing computationally expensive steps in state-of-the-art density functional simulations.
- Density functional theory
- electronic structure
- machine-learning
- + 2
- Python
- Fortran
- Shell
- + 1
METABOLATOR
Analysis of Microcalorimetric Metabolic Data Using Monod's Equation.
- curve fitting
- Data Science
- metabolic load
- + 1
- Python
- HTML
- Jupyter Notebook
Minterpy
Minterpy is an open-source Python package for multivariate polynomial interpolation as well as related tasks, like nonlinear polynomial regression, numerical integration, global optimization, level-set methods, and much more.
- Interpolation
- Modeling
- numerical Integration
- Python
MIRP
MIRP is a python package for quantitative analysis of medical images. It focuses on processing images for integration with radiomics workflows. These workflows either use quantitative features computed using MIRP, or directly use MIRP to process images as input for deep learning models.
- Medical Image Processing
- python
- radiomics
- Python
- Jupyter Notebook
- R
- + 2
mmpxrt
Raytracing code for x-ray spectrometers with (not only) mossaic crystals Helps with design and analysis of x-ray spectrometers. Useful tool for (rather) experienced physicist.
- Python
- CSS
- HTML
- + 2
Multiphase Code Repository by HZDR for OpenFOAM Foundation Software
The Multiphase Code Repository by HZDR provides research code based on OpenFOAM Foundation Software for simulating multiphase flows. Its focus is MultiMorph, an morphology-adaptive Euler-Euler model, supported by validation cases and workflows for robust industrial applications.
- Computational Fluid Dynamics
- Energy
- Euler-Euler method
- + 5
- C++
- Shell
- Lex
- + 2
Multiphase Python Repository by HZDR
Toolkit for reproducible multiphase CFD workflows.
- gitlab
- Numerical Simulations
- Post-processing
- + 1
- Python
- Jinja
- Shell
- + 2
openPMD-api
openPMD is an open meta-data schema that provides meaning and self-description for datasets in science and engineering. This library provides a reference API for openPMD data handling, supporting established I/O backends such as HDF5, ADIOS2, JSON and TOML from serial to MPI-parallel workflows.
- ADIOS
- data
- file-format
- + 8
- C++
- Python
- CMake
- + 5
PIConGPU
PIConGPU is a relativistic Particle-in-Cell code running on graphic processing units as well as regular multi-core processors. It is Open Source und is freely available for download. It can be used to study plasmas with relativistic dynamics, solving the Maxwell-Vlasov system of equations.
- C++
- CPU
- GPU
- + 9
- C++
- Python
- Shell
- + 6
pyMarAI
Neural network model and PyQt5-based user interface for image segmentation of microscopic tumor spheroids. Usable with nnU-Net deep-learning framework. Trained on microscopic images of mouse pheochromocytoma (MPC) cells. Provides pipelines for handling data, running delineation, curating results...
- Artifical Intelligence
- cancer
- Convolutional Neural Networks
- + 6
- Python
PyPlaque
PyPlaque is an open-source Python package for automated analysis of virus plaque assays. It quantifies plaque morphology, size, and intensity from plate images, integrates with Python data tools, and enables reproducible, customizable workflows for high-throughput infection biology studies.
- Health
- Image processing
- Omics
- + 1
- Jupyter Notebook
- Python
Software CaRD
A metadata curation dashboard for hermes.
- metadata
- JavaScript
- HTML
- CSS
- + 1