All software
pertpy
Pertpy is a Python-based modular framework for the analysis of large-scale single-cell perturbation experiments.
- perturbation
- scverse
- single-cell RNA-seq
- Python
AutoGaitA
AutoGaitA streamlines and standardises kinematic analyses of any species performing any rhythmic behaviour, such as walking, swimming or flying. AutoGaitA analyses the kinematics of body coordinate time series data obtained in 2D or 3D with marker-less or marker-based methods.
- biology
- Gait
- Locomotion
- + 3
- Python
flexynesis
A deep-learning based multi-omics sequencing data integration suite
- Python
- Scheme
- Dockerfile
scPower
scPower is a statistical framework for design and power analysis of multi-sample single cell transcriptomics experiments. It enables users to identify the optimal experimental parameters for cell type specific inter-individual DE and eQTL analysis using single cell RNA-seq data given a fixed budget.
- Experimental design
- Health
- scRNA-seq
- + 1
- R
- HTML
- CSS
VoltRon
VoltRon is a spatial omic analysis toolbox for multi-omics integration using spatial image registration. VoltRon is also capable of analyzing multiple types of spatially-aware data modalities.
- Genomics
- spatial omics
- R
- C++
- Dockerfile
- + 2