All software
CrystFEL
CrystFEL is a suite of programs to process data from "serial crystallography" experiments.
- crystallography
- Matter
- structural biology
- + 2
- C
- Julia
- Python
- + 2
Representation of Protein Entities (RoPE)
RoPE clusters related protein structures on torsion angles to derive an interpretable, mathematical conformational space of that protein, revealing relevant protein dynamics.
- C++
- Data analysis
- Data Visualization
- + 4
- C++
- C
- GLSL
- + 4
Helmholtz Research Software Directory
The Helmholtz Research Software Directory is a place to discover and promote research software. Designed for Research Software Engineers and Scientists, it aims to foster FAIR and reuseability of software.
- FAIR Software
- TSX
- TypeScript
- Java
- + 2
DeBCR
DeBCR is a sparsity-efficient deep learning framework for denoising, deblurring, and deconvolving fluorescence microscopy images. Using the m-rBCR model, it restores structural details and improves resolution. It is available as a Python package and napari plugin for efficient image restoration.
- deblurring
- deconvolution
- Deep Learning
- + 3
- Python
- Jupyter Notebook
DeepLOKI
DeepLOKI is an AI-based software that uses deep learning to classify zooplankton species from high-resolution images, improving research efficiency by enabling faster and more accurate onboard image analysis in marine science.
- Data analysis
- Earth & Environment
- Machine learning
- + 2
- Python
Lightning UQ Box
The lightning-uq-box is a PyTorch library that provides various Uncertainty Quantification (UQ) techniques for modern neural network architectures.
- Deep Learning
- python
- uncertainty quantification
- Python
NeXusCreator
Python CLI for generating NeXus HDF5 from experimental data. Uses .nxd templates and optional schema-guided placement, parses inputs into variables, injects values into placeholders, and writes structured .nxs/.h5 output.
- Python
- Makefile
- Shell
OSADCP Toolbox
Open-source Python toolbox called OSADCP for scientists to convert, clean, calibrate and organize binary raw vessel-mounted Acoustic Doppler Current Profiler (ADCP) data for scientific use. The toolbox is designed to process ADCP measurements in deep water by Teledyne RDI Ocean Surveyor ADCPs.
- Data Visualization
- Earth & Environment
- FAIR Data
- + 5
- Python