All software
anvi'o
anvi'o is an open-source software platform for microbial 'omics research enabling analysis and visualization of 'omics data. In development since 2014, it is currently being maintained by the Ecosystem Data Science group at the Helmholtz Institute for Functional Marine Biodiversity.
- Data analysis
- Data Visualization
- Metagenomics
- + 4
- Python
- JavaScript
- HTML
- + 6
DeepLOKI
DeepLOKI is an AI-based software that uses deep learning to classify zooplankton species from high-resolution images, improving research efficiency by enabling faster and more accurate onboard image analysis in marine science.
- Data analysis
- Earth & Environment
- Machine learning
- + 2
- Python
O2A SEQUENCES
O2A SEQUENCES provides a single platform for the full metabarcoding lifecycle: it keeps samples, metadata, and sequences linked, runs containerized workflows that produce provenance-tracked ASV tables, generates submission-ready exports for public archives, and delivers AI-ready outputs.
- bioinformatics
- Data analysis
- data managment
- + 7
otter
The otter Framework combines community network analysis using Co-Occurrence networks, Louvain Clustering and Convergent Cross Mapping networks. Funding through the Helmholtz DataHub Initiative; project iLOVE.
- Community Dynamics
- Earth & Environment
- python
- Python
pyPDAF
pyPDAF provides the functionality to use the Parallel Data Assimilation Framework (PDAF) fully in Python. One can use all functionality of PDAF while implementing the case-specific code for the chosen data assimilation application in Python.
- Atmospheric science
- Bayesian inference
- data assimilation
- + 8
- Cython
- Python
- Fortran
- + 4