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Heat

Heat is a flexible and seamless open-source software for high performance data analytics and machine learning. It provides highly optimized algorithms and data structures for tensor computations using CPUs, GPUs and distributed cluster systems on top of MPI.

CPU
Data analysis
GPU
+ 4

Python
Jupyter Notebook
Shell
+ 1

ioProc

ioProc is a light-weight workflow manager for Python ensuring robust, scalable and reproducible data pipelines. The tool is developed at the German Aerospace Center (DLR) for and in the scientific context of energy systems analysis, however, it is widely applicable in other scientific fields.

Data analysis
FAIR Data
metadata
+ 4

Python
Batchfile
Makefile

iqtools

Collection of code for working with offline complex valued time series data in Python.

Data analysis
Data Visualization
Particle Accelerators
+ 1

Python

JumpDiff

The python package `JumpDiff` offers methods to generate and analyze stochastic processes that are described by a jump-diffusion process.

Data analysis
Energy
ESD
+ 4

Python

KaHyPar

KaHyPar is a fast, high-quality, and scalable algorithm for partitioning graphs and hypergraphs with billions of edges. It finds applications in minimizing communication costs for distributed (hyper)graph computations, quantum circuit simulations, storage sharding in databases, and VLSI design.

Clustering
Data analysis
Graphs
+ 8

kramersmoyal

The Python package `kramersmoyal` provides functions to analyze stochastic drift-diffusion and discontinuous stochastic processes in observational and experimental data.

Data analysis
Drift-Diffusion
Energy
+ 5

Python
TeX

MFDFA

The Python package `MFDFA` provides the tools to perform a multifractal detrended fluctuation analysis that enables the investigation of stochastic processes where long-range memory and persistence are necessary to consider.

Data analysis
Energy
ESD
+ 3

Python

novoSpaRc

novoSpaRc predicts locations of single cells in space by solely using single-cell RNA sequencing data. An existing reference database of marker genes is not required, but significantly enhances performance if available.

Data analysis
open source
single-cell RNA-seq

Jupyter Notebook
HTML
Python

ODV

Ocean Data View (ODV) - Interactive exploration, analysis and visualization of oceanographic and other environmental data.

Data analysis
Data Visualization
Earth & Environment
+ 1

1429

PeakPerformance

PeakPerformance is a Python toolbox for estimating peak areas from mass-spectrometry or HPLC datasets under uncertainty. It applies Bayesian inference using the PyMC library to parametric models of peak curves.

Data analysis
Earth & Environment
mass spectrometry
+ 4

Jupyter Notebook
Python

PeTrack

PeTrack (Pedestrian Tracking) automatically extracts accurate pedestrian trajectories from video recordings (calibration, recognition, tracking). Individual codes enable personalized trajectories with static information of each participant. With a stereo camera also markerless tracking is possible.

Calibration
Correction
Crowd
+ 12

C++
Python
CMake
+ 2

396

PtyLab.m/py/jl

A cross-platform, open-source inverse modeling toolbox for conventional and Fourier ptychography

computational physics
Data analysis
Data Visualization
+ 10

Jupyter Notebook
Python