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37-48 of 58

Emipy

Emipy is a Python package to access, manipulate, analyze and visualize data on various pollutants, which is collected in the European Pollutant Release Register (E-PRTR). Therefore, it enables the easy use of this data for research in different fields (e.g., public health or energy system analysis).

Data analysis
Earth & Environment
Energy
+ 3

Python

JumpDiff

The python package `JumpDiff` offers methods to generate and analyze stochastic processes that are described by a jump-diffusion process.

Data analysis
Energy
ESD
+ 4

Python

simona

This package implements infrastructures for ontology analysis by offering efficient data structures, fast ontology traversal methods, and elegant visualizations. It provides a robust toolbox supporting over 70 methods for semantic similarity analysis.

Data analysis
Data Visualization
FAIR Data
+ 3

R
C++
JavaScript
+ 3

ehrapy

ehrapy is a modular open-source Python framework designed for exploratory end-to-end analysis of heterogeneous epidemiology and electronic health record data.

Data analysis
open source
python

Python
Jupyter Notebook

Rankings Reloaded

Rankings Reloaded is an open-source toolkit for robust and accurate benchmark visualization and ranking. It is an out-of-the-box and open-source framework for analyzing and visualizing algorithm results in an accurate way. It uses challengeR and brings advantages of it with user-friendly interface.

Data analysis
Data Visualization
Information
+ 1

scanpy

Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.

bioinformatics
Data analysis
python

Python
R

VASCA

The VAriable Source Cluster Analysis (VASCA) is an astronomy pipeline for time-variable sources.

Astronomy
catalogue
Data analysis
+ 6

Jupyter Notebook
Python

2x2, 3x3 and nxn Space-Filling Curves

Implementation of all possible forms of 2x2 and 3x3 space-filling curves, and nxn curves expanded from any specific level-1 units. It also implements the H-curve and the three-dimensional Hilbert curve.

Data analysis
Data Visualization
open source

CIMPredict

CIMPredict delivers an alternative to the FRAX fracture risk calculator for osteoporosis patients based on a new Calcium isotope marker in blood.

Blue Health Tech
Data analysis
Health
+ 2

Python
R

DAMNIT

DAMNIT (Data And Metadata iNspection Interactive Thing) is a tool developed by the Data Analysis group at the European XFEL to provide users with a way to automatically create an overview of their experiment, hopefully replacing the manually-created spreadsheets that are often used.

Data analysis
FAIR Data
metadata
+ 1

Python
Dockerfile

DeepLOKI

DeepLOKI is an AI-based software that uses deep learning to classify zooplankton species from high-resolution images, improving research efficiency by enabling faster and more accurate onboard image analysis in marine science.

Data analysis
Earth & Environment
Machine learning
+ 2

Python

FSQC

This package provides quality assurance / quality control scripts for FastSurfer- or FreeSurfer-processed structural MRI data.

Data analysis
MRI
Neuroimaging
+ 2

Python
Dockerfile