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AiiDA-KKR

This AiiDA plugin provides high-throughput automation and FAIR data management for the Jülich KKR codes.

Data Visualization
FAIR Data
Information
+ 4

Python
Shell
OpenEdge ABL

AiiDA-Spirit

AiiDA plugin for FAIR high-throughput spin-dynamics simulations with the Spirit code (http://spirit-code.github.io/).

data managment
Data Visualization
FAIR Data
+ 5

JavaScript
Python
HTML
+ 1

Alpaca

Alpaca (Automated Lightweight Provenance Capture) captures the provenance during the execution of Python scripts that process data and stores the information using a data model based on the the W3C PROV standard.

FAIR Data
Information
metadata
+ 3

Python

anndata

anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and a PyTorch interface.

bioinformatics
data managment
FAIR Data
+ 1

Python

base-repo

Base-repo is a generic, domain-agnostic research data repository suitable to store and manage all kinds of research data. Its content is organized as DataResources, which consist of descriptive DataCite-compliant Metadata and one or more data elements, either stored as files or linked by reference.

Datacite
data managment
FAIR Data
+ 1

Java
Shell
Dockerfile

Chemotion ELN

Chemotion ELN is an Open Source electronic lab notebook (ELN) for scientists working in chemistry and colleagues from neighboring disciplines, developed and updated at KIT. The web-based application allows the acquisition, management, storage, processing, and sharing of research data.

Chemistry
Electronic Lab Notebook
Experimental Sciences
+ 2

JavaScript
Ruby
SCSS
+ 5

CICMoD - A Climate Index Collection based on Model Data

The software provides a consistent and comprehensive collection of climate indices typically used to describe Earth System dynamics and serves as a new benchmark data set. It allows users to develop new machine learning methods and to compare their results to existing methods in an objective way.

Earth & Environment
FAIR Data
Image processing
+ 1

Jupyter Notebook
Python
Shell
+ 1

DataLad

DataLad is a tool for the joint management of code, data, and their relationship, built on top of the version control systems Git & git-annex. It adapts principles of open-source software development & distribution to address challenges of data management, data sharing, & digital provenance capture.

DataLad
data managment
data sharing
+ 8

Python
Shell
Makefile
+ 4

117

dCache

dCache is a system for storing and retrieving huge amounts of scientific data, distributed among a large number of heterogeneous server nodes, under a single virtual filesystem tree with a variety of standard access methods including NFSv4.1 (pNFS), FTP, WebDav and xroot.

data managment
FAIR Data

Java
JavaScript
XSLT
+ 14

HELIPORT

The guidance system HELIPORT aims to make the entire life cycle of a scientific project according to the FAIR principles. In particular, our data management solution deals with the areas from the generation of the data to the publication of primary research data, the workflows and results.

data managment
FAIR
FAIR Data
+ 5

Python
HTML
JavaScript
+ 2

Kadi4Mat

Kadi4Mat is an open-source software for managing research data, which supports close cooperation between experimenters, theorists, and simulators, especially in the field of materials science.

Electronic Lab Notebook
FAIR Data
Materials Science
+ 4

Python
Vue
HTML
+ 2

RiboDetector

RiboDetector is designed to rapidly and accurately detect rRNA sequences from metagenomic, metatranscriptomic, and ncRNA sequencing data. It has been optimized for use with both CPUs and GPUs. It outperforms existing software by delivering 10-50x faster runtime and ~10x fewer false classifications.

Data analysis
FAIR Data
Genomics
+ 3

Python