HIFIS Software Spotlights

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Logo for ComplexHeatmap

ComplexHeatmap

Complex heatmaps are efficient in visualizing associations between different sources of data sets and revealing potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

  • bioconductor
  • Clustering
  • Data Science
  • + 3
  • R
  • CSS
1
8768
Logo for circlize

circlize

Circular layout is an efficient way for the visualization of huge amounts of information. The circlize package provides an implementation of circular layout generation in R.

  • Data analysis
  • Data Science
  • Data Visualization
  • + 3
  • R
1
3466
Logo for DataLad

DataLad

DataLad is a tool for the joint management of code, data, and their relationship, built on top of the version control systems Git & git-annex. It adapts principles of open-source software development & distribution to address challenges of data management, data sharing, & digital provenance capture.

  • DataLad
  • data managment
  • data sharing
  • + 8
  • Python
  • Shell
  • Makefile
  • + 4
61
503
Logo for PeTrack

PeTrack

PeTrack (Pedestrian Tracking) automatically extracts accurate pedestrian trajectories from video recordings (calibration, recognition, tracking). Individual codes enable personalized trajectories with static information of each participant. With a stereo camera also markerless tracking is possible.

  • Annotation
  • Calibration
  • Computer Vision
  • + 17
  • C++
  • Python
  • CMake
  • + 2
16
500
Logo for EnrichedHeatmap

EnrichedHeatmap

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. The EnrichedHeatmap package provides advanced solutions for normalizing genomic signals within target regions as well as offering highly customizable visualizations.

  • Data analysis
  • Data Visualization
  • FAIR Data
  • + 2
  • R
  • CSS
  • C++
1
208
Logo for simplifyEnrichment

simplifyEnrichment

A new clustering algorithm, "binary cut", for clustering similarity matrices of functional terms is implemeted in this package. It also provides functions for visualizing, summarizing and comparing the clusterings.

  • Data analysis
  • Data Visualization
  • FAIR Data
  • + 3
  • R
  • CSS
1
191
Logo for InteractiveComplexHeatmap

InteractiveComplexHeatmap

InteractiveComplexHeatmap is an R package that converts static heatmaps produced from ComplexHeatmap package into an interactive Shiny app only with one extra line of code.

  • Data analysis
  • Data Science
  • Data Visualization
  • + 3
  • R
  • JavaScript
  • CSS
1
182
Logo for rGREAT

rGREAT

GREAT is a type of functional enrichment analysis directly performed on genomic regions. This package implements the GREAT algorithm, also it supports directly interacting with the GREAT web service (the online GREAT analysis). Both analysis can be viewed by a Shiny application.

  • Data analysis
  • Data Visualization
  • FAIR Data
  • + 3
  • R
  • C++
1
95
Logo for RiboDetector

RiboDetector

RiboDetector is designed to rapidly and accurately detect rRNA sequences from metagenomic, metatranscriptomic, and ncRNA sequencing data. It has been optimized for use with both CPUs and GPUs. It outperforms existing software by delivering 10-50x faster runtime and ~10x fewer false classifications.

  • Data analysis
  • FAIR Data
  • Genomics
  • + 3
  • Python
4
83
Logo for SpatialData framework

SpatialData framework

SpatialData is an open and interoperable data framework for ingesting, representing, processing and visualizing spatial omics datasets.

  • Data Visualization
  • FAIR Data
  • Multi omics
  • + 3
  • Python
  • Dockerfile
13
64
Logo for cola

cola

Subgroup classification is a basic task in genomic data analysis. The cola package provides a general framework for subgroup classification by consensus partitioning.

  • Data analysis
  • Data Visualization
  • FAIR Data
  • + 3
  • R
  • C++
1
48
Logo for Aviator

Aviator

Aviator is a web service facilitating easy surveillance of scientific online tools. It currently checks more than 13,000 websites twice a day for availability and saves numerous features (response time, RAM usage security certificates, analytic tools / trackers, etc.) in a FAIR data repository.

  • Data Visualization
  • FAIR Data
  • FAIR Software
  • + 8
  • Python
  • HTML
  • JavaScript
  • + 5
6
37