All software
CellRank
CellRank is a computational framework to study cellular fate decisions based on various types of single-cell genomics data. CellRank scales to large cell numbers, is fully compatible with the scverse ecosystem, and is easy to use.
- Data analysis
- fate mapping
- fate prediction
- + 7
- Python
hCoCena - horizontal integration and analysis of transcriptomics datasets
hCoCena is an R-package that allows you to comprehensively and easily analyse your transcriptomics data. It also provides the option to integrate several datasets using a network-based integration approach and analyse them jointly. Tutorials and a Docker image exist to help you get to know the tool.
- Data analysis
- Gene Expression
- Health
- + 1
- R
MapMan
MapMan visualises data from gene expression analyses. Genes or proteins with a common function are visualised and evaluated together. Mercator assigns the annotations for this. Changes in processes and pathways can be revealed, visualised and evaluated quantitatively.
- Annotation
- Earth & Environment
- Gene Expression
- + 2