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HIFIS Software Spotlights

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1-12 of 14

ComplexHeatmap

Complex heatmaps are efficient in visualizing associations between different sources of data sets and revealing potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

bioconductor
Clustering
Data Science
+ 3

8225

maftools

maftools is a comprehensive toolkit for processing somatic variants from cohort-based cancer genomic studies

cancer
Classification
Data analysis
+ 14

3465

circlize

Circular layout is an efficient way for the visualization of huge amounts of information. The circlize package provides an implementation of circular layout generation in R.

Data analysis
Data Science
Data Visualization
+ 3

3299

anvi'o

anvi'o is an open-source software platform for microbial 'omics research enabling analysis and visualization of 'omics data. In development since 2014, it is currently being maintained by the Ecosystem Data Science group at the Helmholtz Institute for Functional Marine Biodiversity.

Data analysis
Data Visualization
Metagenomics
+ 4

Python
JavaScript
HTML
+ 5

2236

EnrichedHeatmap

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. The EnrichedHeatmap package provides advanced solutions for normalizing genomic signals within target regions as well as offering highly customizable visualizations.

Data analysis
Data Visualization
FAIR Data
+ 2

199

simplifyEnrichment

A new clustering algorithm, "binary cut", for clustering similarity matrices of functional terms is implemeted in this package. It also provides functions for visualizing, summarizing and comparing the clusterings.

Data analysis
Data Visualization
FAIR Data
+ 3

175

InteractiveComplexHeatmap

InteractiveComplexHeatmap is an R package that converts static heatmaps produced from ComplexHeatmap package into an interactive Shiny app only with one extra line of code.

Data analysis
Data Science
Data Visualization
+ 3

R
JavaScript
CSS

152

rGREAT

GREAT is a type of functional enrichment analysis directly performed on genomic regions. This package implements the GREAT algorithm, also it supports directly interacting with the GREAT web service (the online GREAT analysis). Both analysis can be viewed by a Shiny application.

Data analysis
Data Visualization
FAIR Data
+ 3

SpatialData framework

SpatialData is an open and interoperable data framework for ingesting, representing, processing and visualizing spatial omics datasets.

Data Visualization
FAIR Data
Multi omics
+ 3

Python
Dockerfile

cola

Subgroup classification is a basic task in genomic data analysis. The cola package provides a general framework for subgroup classification by consensus partitioning.

Data analysis
Data Visualization
FAIR Data
+ 3

HilbertCurve

Hilbert curve is a type of space-filling curves that fold one dimensional axis into a two dimensional space, but with still preserves the locality. This package aims to provide an easy and flexible way to visualize data through Hilbert curve.

Data analysis
Data Science
Data Visualization
+ 3

spiralize

It visualizes data along an Archimedean spiral, makes so-called spiral graph or spiral chart. It has two major advantages for visualization: 1. It is able to visualize data with very long axis with high resolution. 2. It is efficient for time series data to reveal periodic patterns.

Data analysis
Data Science
Data Visualization
+ 3

R
JavaScript
CSS