All software
base-repo
Base-repo is a generic, domain-agnostic research data repository suitable to store and manage all kinds of research data. Its content is organized as DataResources, which consist of descriptive DataCite-compliant Metadata and one or more data elements, either stored as files or linked by reference.
- Datacite
- data managment
- FAIR Data
- + 1
- Java
- Shell
- Dockerfile
Cat4KIT
Cat4KIT is an open-source framework for cataloging, managing and publishing research data according to the FAIR principles. Building on the STAC-Ecosystem, it allows for a simple and user-friendly description, integration and discovery of research data.
- data managment
- Earth & Environment
- FAIR Data
- + 2
DataDesc
The framework surrounding DataDesc, a metadata schema for software documentation with focus on interfaces, comes with a machine-actionable metadata exchange format and a software toolkit supporting the documentation, extraction and publication of software metadata.
- data managment
- ESD
- FAIR Data
- + 4
- Python
- Shell
- Jupyter Notebook
DataFlow
A comprehensive framework for automated data processing and manual postprocessing, including quality control and flagging. Modular and extensible design allows to create customizable pipelines and monitor their performance throughout the data lifecycle.
- data managment
- Data Visualization
- Pipeline
- + 2
- TSX
- Python
- TypeScript
- + 2
DataLad Container extension
This DataLad extension package equips DataLad's run/rerun functionality with the ability to transparently execute commands in containerized computational environments. On re-run, DataLad will automatically obtain any required container at the correct version prior execution.
- DataLad
- data managment
- Workflow Execution
- Python
- Shell
- Makefile
- + 2
Herbie - The Semantic ELN
Herbie is a semantic ELN developed at Hereon. Its open technology supports arbitrary scientific fields and enables structured, machine‑readable, FAIR documentation. It generates intuitive forms, semantically annotates all entries, and builds a knowledge graph for complex queries.
- Aeronautics, Space and Transport
- data managment
- Earth & Environment
- + 10
- Elm
- Python
- JavaScript
- + 2
inst.dlr
Inst.dlr is an instrument metadata database which follows the PIDINST schema. The application is a python package which handles transactions with a MongoDB database. Also, it uses FastAPI to create end-points for the user to introduce data or retrieve entries from the database.
- Databases
- data managment
- FAIR Data
- + 2
MetaStore
MetaStore is a research data repository software for storing metadata documents and schemas. Quality and consistency are ensured by associating and validating each document against a schema. It supports JSON and XML.
- data managment
- FAIR Data
- metadata
- + 1
- Java
- JavaScript
- HTML
- + 3
O2A SEQUENCES
O2A SEQUENCES provides a single platform for the full metabarcoding lifecycle: it keeps samples, metadata, and sequences linked, runs containerized workflows that produce provenance-tracked ASV tables, generates submission-ready exports for public archives, and delivers AI-ready outputs.
- bioinformatics
- Data analysis
- data managment
- + 7
RO Crate Java
A Java library to create and modify RO-Crates. The aim of this implementation is to not require too deep knowledge of the specification, and avoiding crates which do not fully comply to the specification, at the same time.
- data managment
- FAIR Data
- FAIR Software
- + 3
- Java
- HTML
- FreeMarker
- + 1
Sensor Management System
The Sensor Management System (SMS) allows the comprehensive acquisition, administration and export of meta data of platforms, sensors and measurement configurations by stations and campaigns operated in the Helmholtz research field Earth & Environment.
- catalogue
- data managment
- Earth & Environment
- + 4
- Python
- Vue
- TypeScript
- + 2
spatial.IO
An integrated cloud-ready geospatial data management system.
- data managment
- Earth & Environment
- geospatial data
- Python
- Vue
- TypeScript
- + 2