All software
cola
Subgroup classification is a basic task in genomic data analysis. The cola package provides a general framework for subgroup classification by consensus partitioning.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- C++
MEmilio
MEmilio implements various models for infectious disease dynamics, from compartmental to agent-based models. Through efficient implementation and parallelization, MEmilio brings cutting edge and compute intensive models to a large scale, enabling high-resolution spatiotemporal disease dynamics.
- Agent-based Model
- C++
- compartmental model
- + 12
- C++
- Python
- CMake
- + 3
xDECAF
An extensible data flow diagram constraint analysis framework for information security
- Data Flow Diagram
- Modeling
- open source
- + 1
- Java
- Python
- Nix
- + 1
Aviator
Aviator is a web service facilitating easy surveillance of scientific online tools. It currently checks more than 13,000 websites twice a day for availability and saves numerous features (response time, RAM usage security certificates, analytic tools / trackers, etc.) in a FAIR data repository.
- Data Visualization
- FAIR Data
- FAIR Software
- + 8
- Python
- HTML
- JavaScript
- + 5
FatSegNet
A fully automated deep learning pipeline for adipose tissue (visceral and subcutaneous) segmentation on abdominal Dixon MRI.
- Data analysis
- MRI
- open source
- Python
- Dockerfile
- Shell
Album
Album is open-source infrastructure for building executable digital libraries of reusable, discoverable, and reproducible scientific software methods.
- FAIR Software
- GUI
- Interactivity
- + 5
- Python
- Dockerfile
- Shell
HilbertCurve
Hilbert curve is a type of space-filling curves that fold one dimensional axis into a two dimensional space, but with still preserves the locality. This package aims to provide an easy and flexible way to visualize data through Hilbert curve.
- Data analysis
- Data Science
- Data Visualization
- + 3
- R
- C++
- CSS
- + 1
Automating Requirements and Documentation Comprehension (ARDoCo)
Automating Requirements and Documentation Comprehension (ARDoCo) is a framework to connect architecture documentation, requirements, and models while identifying missing or deviating elements (inconsistencies). An element can be any representable item of the model like a software component.
- Consistency
- Documentation
- Inconsistency Detection
- + 6
- Java
- ANTLR
- Markdown
- + 3
ChASE
ChASE is a modern and scalable library to solve dense Hermitian (Symmetric) algebraic eigenvalue problems based on a spectral polynomial filter. The library is fully parallelized, and is particularly effective for sequences of eigenproblems as they often arise in electronic structure theory.
- C++
- Eigensolver
- GPU
- + 6
- C++
- Cuda
- CMake
- + 6
Representation of Protein Entities (RoPE)
RoPE clusters related protein structures on torsion angles to derive an interpretable, mathematical conformational space of that protein, revealing relevant protein dynamics.
- C++
- Data analysis
- Data Visualization
- + 4
- C++
- C
- GLSL
- + 4
ARTIST
AI-enhanced differentiable Ray Tracer for Irradiation Prediction in Solar Tower Digital Twins
- Concentrated Solar Energy
- Differentiable Ray Tracing
- digital twin
- + 5
- Python
- TeX
LaPy
LaPy is an open-source Python package for differential geometry on triangle and tetrahedra meshes. It includes an FEM solver to estimate the Laplace, Poisson or Heat equations, also the computations of gradients, divergence, mean-curvature flow, conformal mappings, geodesics, ShapeDNA and more.
- computational geometry
- FEM
- Laplace
- + 4
- Python