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Aviator
Aviator is a web service facilitating easy surveillance of scientific online tools. It currently checks more than 13,000 websites twice a day for availability and saves numerous features (response time, RAM usage security certificates, analytic tools / trackers, etc.) in a FAIR data repository.
33
mentions
6
contributors
Cite this software
What Aviator can do for you
Aviator
https://ccb-compute2.cs.uni-saarland.de/aviator
Aviator is a web-server monitoring the availability of other published web-servers. It allows researchers to monitor their own tools or to asses if a tool they would like to access is temporarily or permanently offline.
Aviator is composed of two modules:
- Tool List: web-servers collected automatically from literature
- Aviator-enabled: web-servers manually added by their authors
The web-server URL or an API endpoint provided by the authors are queried twice per day. In addition to providing an availability overview we provide the possibility for authors to be notified if their webserver is offline for an unexpected period of time.
To add your published web-server to Aviator a simple API endpoint and a registration is needed.
License
Keywords
Data Visualization
FAIR Data
FAIR Software
Health
Information
metadata
monitoring
open source
Performance Analysis
python
research software sustainability
Programming languages
License
</>Source code
Participating organisations
Hel
Reference papers
Journal articles
2- 1.Author(s): Tobias Fehlmann, Fabian Kern, Pascal Hirsch, Robin Steinhaus, Dominik Seelow, Andreas KellerPublished in Nucleic Acids Research by Oxford University Press (OUP) in 2021, page: W46-W5110.1093/nar/gkab396
- 2.Author(s): Fabian Kern, Tobias Fehlmann, Andreas KellerPublished in Nucleic Acids Research by Oxford University Press (OUP) in 2020, page: 12523-1253310.1093/nar/gkaa1125
Mentions
Book section
3- 1.Author(s): Jan Brezovsky, Aaftaab Sethi, Bartłomiej SurpetaPublished in Reference Module in Life Sciences by Elsevier in 202410.1016/b978-0-323-95502-7.00089-0
- 2.Author(s): Tsukasa Fukunaga, Junichi Iwakiri, Michiaki HamadaPublished in Methods in Molecular Biology, RNA Structure Prediction by Springer US in 2023, page: 175-19510.1007/978-1-0716-2768-6_11
- 3.Author(s): Dong Si, Hanze Meng, Jonas Pfab, Yinrui Deng, Yutong Xie, Jackson Tan, Sheung Him Martin Chow, Jason Chen, Aditi JainPublished in Computational Biology, Algorithms and Methods in Structural Bioinformatics by Springer International Publishing in 2022, page: 101-11410.1007/978-3-031-05914-8_6
Conference papers
2- 1.Author(s): Anthony Stell, Vedant Chauhan, Sandra Amador, Felix Beuschlein, Judith Favier, David Gil, Philip Greenwood, Ronald de Krijger, Matthias Kroiss, Samanta Ortuno, Attila Patocs, Axel WalchPublished in Proceedings of the 16th International Joint Conference on Biomedical Engineering Systems and Technologies by SCITEPRESS - Science and Technology Publications in 2023, page: 105-11610.5220/0011665100003414
- 2.Author(s): Wasana NgaogatePublished in 2023 27th International Computer Science and Engineering Conference (ICSEC) by IEEE in 2023, page: 341-34710.1109/icsec59635.2023.10329704
Journal articles
19- 1.Author(s): Moritz Ertelt, Vikram Khipple Mulligan, Jack B. Maguire, Sergey Lyskov, Rocco Moretti, Torben Schiffner, Jens Meiler, Clara T. SchoederPublished in PLOS Computational Biology by Public Library of Science (PLoS) in 2024, page: e101193910.1371/journal.pcbi.1011939
- 2.Author(s): Amitava Roy, Ethan Ward, Illyoung Choi, Michele Cosi, Tony Edgin, Travis S Hughes, Md Shafayet Islam, Asif M Khan, Aakash Kolekar, Mariah Rayl, Isaac Robinson, Paul Sarando, Edwin Skidmore, Tyson L Swetnam, Mariah Wall, Zhuoyun Xu, Michelle L Yung, Nirav Merchant, Travis J WheelerPublished in 202410.1093/nar/gkae1109
- 3.Author(s): Colbie J. Reed, Rémi Denise, Jacob Hourihan, Jill Babor, Marshall Jaroch, Maria Martinelli, Geoffrey Hutinet, Valérie de Crécy-LagardPublished in Microbial Genomics by Microbiology Society in 202410.1099/mgen.0.001183
- 4.Author(s): Diego A Forero, Diego A Bonilla, Yeimy González-Giraldo, George P PatrinosPublished in Briefings in Functional Genomics by Oxford University Press (OUP) in 202410.1093/bfgp/elae029
- 5.Author(s): Panagiota I. Kontou, Pantelis G. BagosPublished in BioData Mining by Springer Science and Business Media LLC in 202410.1186/s13040-024-00385-x
- 6.Author(s): Wen Li, Zhining Zhang, Bo Xie, Yunlin He, Kangming He, Hong Qiu, Zhiwei Lu, Chunlan Jiang, Xuanyu Pan, Yuxiao He, Wenyu Hu, Wenjian Liu, Tengcheng Que, Yanling HuPublished in Computational and Structural Biotechnology Journal by Elsevier BV in 2024, page: 659-66810.1016/j.csbj.2024.01.002
- 7.Author(s): Jie‐Hao Ou, Han‐Yun Li, Yun‐Shen Lu, Chi‐Yu Chen, Yu‐Hsuan Fan, Guan Jie Phang, Guan‐Ying Huang, Sung‐Yuan Hsieh, Yin‐Tse HuangPublished in 202410.1002/jobm.202400452
- 8.Author(s): Luis Pedro CoelhoPublished in PLOS Computational Biology by Public Library of Science (PLoS) in 2024, page: e101192010.1371/journal.pcbi.1011920
- 9.Author(s): Federico GagoPublished in Marine Drugs by MDPI AG in 2023, page: 10010.3390/md21020100
- 10.Author(s): Vipendra Kumar Singh, D. C. Thakur, Naina Rajak, Anand Mishra, Ankur Kumar, Rajanish Giri, Neha GargPublished in Journal of Biomolecular Structure and Dynamics by Informa UK Limited in 2023, page: 1-1210.1080/07391102.2023.2273440
- 11.Author(s): Pengli Cai, Sheng Liu, Dachuan Zhang, Huadong Xing, Mengying Han, Dongliang Liu, Linlin Gong, Qian-Nan HuPublished in BMC Bioinformatics by Springer Science and Business Media LLC in 202310.1186/s12859-023-05281-5
- 12.Author(s): Stefanie Scheiper-Welling, Monika Tabunscik, Theresa E. Gross, Tina Jenewein, Britt M. Beckmann, Constanze Niess, Elise Gradhand, Cora Wunder, Peter M. Schneider, Markus A. Rothschild, Marcel A. Verhoff, Silke KaufersteinPublished in International Journal of Legal Medicine by Springer Science and Business Media LLC in 2022, page: 475-48210.1007/s00414-021-02764-z
- 13.Author(s): Daniel Garijo, Hervé Ménager, Lorraine Hwang, Ana Trisovic, Michael Hucka, Thomas Morrell, Alice Allen, Task Force on Best Practices for Software Registries, SciCodes ConsortiumPublished in PeerJ Computer Science by PeerJ in 2022, page: e102310.7717/peerj-cs.1023
- 14.Author(s): Alexandre G. de Brevern, Joseph RebehmedPublished in Amino Acids by Springer Science and Business Media LLC in 2022, page: 575-59010.1007/s00726-021-03119-z
- 15.Author(s): Valérie de Crécy-lagard, Rocio Amorin de Hegedus, Cecilia Arighi, Jill Babor, Alex Bateman, Ian Blaby, Crysten Blaby-Haas, Alan J Bridge, Stephen K Burley, Stacey Cleveland, Lucy J Colwell, Ana Conesa, Christian Dallago, Antoine Danchin, Anita de Waard, Adam Deutschbauer, Raquel Dias, Yousong Ding, Gang Fang, Iddo Friedberg, John Gerlt, Joshua Goldford, Mark Gorelik, Benjamin M Gyori, Christopher Henry, Geoffrey Hutinet, Marshall Jaroch, Peter D Karp, Liudmyla Kondratova, Zhiyong Lu, Aron Marchler-Bauer, Maria-Jesus Martin, Claire McWhite, Gaurav D Moghe, Paul Monaghan, Anne Morgat, Christopher J Mungall, Darren A Natale, William C Nelson, Seán O’Donoghue, Christine Orengo, Katherine H O’Toole, Predrag Radivojac, Colbie Reed, Richard J Roberts, Dmitri Rodionov, Irina A Rodionova, Jeffrey D Rudolf, Lana Saleh, Gloria Sheynkman, Francoise Thibaud-Nissen, Paul D Thomas, Peter Uetz, David Vallenet, Erica Watson Carter, Peter R Weigele, Valerie Wood, Elisha M Wood-Charlson, Jin XuPublished in Database by Oxford University Press (OUP) in 202210.1093/database/baac062
- 16.Author(s): Jianjun Hu, Stanislav Stefanov, Yuqi Song, Sadman Sadeed Omee, Steph-Yves Louis, Edirisuriya M. D. Siriwardane, Yong Zhao, Lai WeiPublished in npj Computational Materials by Springer Science and Business Media LLC in 202210.1038/s41524-022-00750-6
- 17.Author(s): Swetha SPublished in Technoarete Transactions on Advances in Data Science and Analytics by Technoarete Research and Development Association in 2022, page: 12-1710.36647/ttadsa/01.01.a003
- 18.Author(s): Oriol Bárcenas, Carlos Pintado-Grima, Katarzyna Sidorczuk, Felix Teufel, Henrik Nielsen, Salvador Ventura, Michał BurdukiewiczPublished in Computational and Structural Biotechnology Journal by Elsevier BV in 2022, page: 6526-653310.1016/j.csbj.2022.11.043
- 19.Author(s): Michael Bernhofer, Christian Dallago, Tim Karl, Venkata Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, Laszlo Kajan, Sean O’Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard RostPublished in Nucleic Acids Research by Oxford University Press (OUP) in 2021, page: W535-W54010.1093/nar/gkab354
Other
9- 1.Author(s): Lauren Mak, Braden Tierney, Cynthia Ronkowski, Rodolfo Brizola Toscan, Berk Turhan, Michael Toomey, Juan Sebastian Andrade Martinez, Chenlian Fu, Alexander G Lucaci, Arthur Henrique Barrios Solano, Joao Carlos Setubal, James R Henriksen, Sam Zimmerman, Malika Kopbayeva, Anna Noyvert, Zana Iwan, Shraman Kar, Nikita Nakazawa, Dmitry Meleshko, Dmytro Horyslavets, Valeriia Kantsypa, Alina Frolova, Andre Kahles, David Danko, Eran Elhaik, Pawel Labaj, Christopher Mason, Iman HajirasoulihaPublished in 202310.1101/2023.04.09.536171
- 2.Author(s): Colbie J. Reed, Rémi Denise, Jacob Hourihan, Jill Babor, Marshall Jaroch, Maria Martinelli, Geoffrey Hutinet, Valérie de Crécy-LagardPublished by Cold Spring Harbor Laboratory in 202310.1101/2023.05.03.539116
- 3.Published by PeerJ in 202210.7287/peerj-cs.1023v0.3/reviews/1
- 4.Published by PeerJ in 202210.7287/peerj-cs.1023v0.2/reviews/2
- 5.Published by PeerJ in 202210.7287/peerj-cs.1023v0.1/reviews/1
- 6.Published by PeerJ in 202210.7287/peerj-cs.1023v0.1/reviews/2
- 7.Published by PeerJ in 202210.7287/peerj-cs.1023v0.3/reviews/2
- 8.Author(s): Michael Bernhofer, Christian Dallago, Tim Karl, Venkata Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, Laszlo Kajan, Sean O’Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard RostPublished by Cold Spring Harbor Laboratory in 202110.1101/2021.02.23.432527
- 9.Author(s): Alice Wittig, Fábio Miranda, Martin Hölzer, Tom Altenburg, Jakub M. Bartoszewicz, Sebastian Beyvers, Marius A. Dieckmann, Ulrich Genske, Sven H. Giese, Melania Nowicka, Hugues Richard, Henning Schiebenhoefer, Anna-Juliane Schmachtenberg, Paul Sieben, Ming Tang, Julius Tembrockhaus, Bernhard Y. Renard, Stephan FuchsPublished by Cold Spring Harbor Laboratory in 202110.1101/2021.02.03.429146
Contributors
Contact person
FK
Fabian Michael Kern
Co-PI, scientific developer
Helmholtz Institute for Pharmaceutical Research Saarland
0000-0002-8223-3750
Mail Fabian MichaelTF
Tobias Fehlmann
Author/Developer/Maintainer
FK
Fabian Michael Kern
Co-PI, scientific developer
Helmholtz Institute for Pharmaceutical Research Saarland
PH
Pascal Hirsch
Author/Developer/Maintainer
Helmholtz Institute for Pharmaceutical Research Saarland
RS
Robin Steinhaus
DS
Dominik Seelow
AK
Andreas Keller
Co-PI, scientific developer
Helmholtz Institute for Pharmaceutical Research Saarland
Helmholtz Program-oriented Funding IV
Research Field
Research Program
PoF Topic
3 Health
3.3 Systems Medicine and Cardiovascular Diseases
3.3.3 Integrative Biomedicine
5 Information
5.1 Engineering Digital Futures: Supercomputing, Data Management and Information Security for Knowledge and Action
5.1.1 Enabling Computational- & Data-Intensive Science and Engineering
5.1.4 Knowledge for Action
- 3 Health
- 3.3 Systems Medicine and Cardiovascular Diseases
- 3.3.3 Integrative Biomedicine
- 5 Information
- 5.1 Engineering Digital Futures: Supercomputing, Data Management and Information Security for Knowledge and Action
- 5.1.1 Enabling Computational- & Data-Intensive Science and Engineering
- 5.1.4 Knowledge for Action